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Lag0010602 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010602
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr1:2004608..2005253
RNA-Seq ExpressionLag0010602
SyntenyLag0010602
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PRQ32559.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]1.0e-0346.55Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
        ++ETD L  V+ ++    D+SE+G L+ DI+ L+   G   V FTPRQ N+VAH LAS
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
XP_023884925.1 uncharacterized protein LOC111997106 [Quercus suber]1.0e-0340Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLD
        +VE D++ +V+ +   V ++S +G+++DDIR LL       +    R GN VAHVLA  AR+ LD
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLD
XP_023904193.1 uncharacterized protein LOC112015961 [Quercus suber]7.6e-0440.3Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLDCV
        ++E DSL ++K L  +V  +S +GLL+DD++ L +         T R+GN+VAH LA  A+S L+ V
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLDCV
XP_024171609.1 uncharacterized protein LOC112177560 [Rosa chinensis]4.5e-0447.54Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLAR
        +VETD L LV  +     D+SE+G L+ D+R LLH   + KVL   RQ N VAH+LA  A+
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLAR
XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]4.5e-0448.28Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
        +VETD L  V+ ++    D+SE+G L+ DI+ L+   G   V FTPRQ N+VAH LAS
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
TrEMBL top hitse value%identityAlignment
A0A2P6QEG4 Putative ribonuclease H-like domain-containing protein4.8e-0446.55Show/hide
Query:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
        ++ETD L  V+ ++    D+SE+G L+ DI+ L+   G   V FTPRQ N+VAH LAS
Subjt:  MVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLAS
A0A5B6UL96 Reverse transcriptase6.3e-0430.77Show/hide
Query:  GSFMVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLDCVGLKNGLVKFLRLVWMHLSTRE
        G+ ++E DSL ++K       D S++G  + D++++ + C S K  FTPR  N +AH+LA+      +   L N + +F  +   + S RE
Subjt:  GSFMVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLDCVGLKNGLVKFLRLVWMHLSTRE
A0A5P1FGZ5 RNase H domain-containing protein6.3e-0436.99Show/hide
Query:  MGFLSGSFMVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLD
        +G L G+  +E+D L L+ +LH E++D   +G L+DD +     CG   + F P+  NKVAHVL     S ++
Subjt:  MGFLSGSFMVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCTTGTCGGGCTCTTTCATGGTAGAGACTGATTCCTTACGGTTGGTGAAGATTCTTCATGGGGAGGTGCATGATGTTTCGGAAGTGGGATTGTTGATGGATGA
TATTCGTCGGCTTCTCCACCCTTGTGGCAGTGATAAGGTTCTGTTTACACCACGTCAGGGAAACAAAGTGGCGCATGTTTTAGCTAGCTTGGCCCGCTCTTACTTGGATT
GTGTTGGATTGAAGAATGGCCTAGTGAAGTTTCTGAGGTTGGTCTGGATGCATCTGAGCACCAGAGAACTTTATGCATGTTATGCTTATGGTTTGCTCTGTTTGTCTGGG
TTGAGGCCACTGCATCTGAGCTTTGGACCTATATGTTTGATCCTATTTTCAGTGTTGAGCTTCATTACTGAGATTCAGAGTTGGGATTTGCGATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTTCTTGTCGGGCTCTTTCATGGTAGAGACTGATTCCTTACGGTTGGTGAAGATTCTTCATGGGGAGGTGCATGATGTTTCGGAAGTGGGATTGTTGATGGATGA
TATTCGTCGGCTTCTCCACCCTTGTGGCAGTGATAAGGTTCTGTTTACACCACGTCAGGGAAACAAAGTGGCGCATGTTTTAGCTAGCTTGGCCCGCTCTTACTTGGATT
GTGTTGGATTGAAGAATGGCCTAGTGAAGTTTCTGAGGTTGGTCTGGATGCATCTGAGCACCAGAGAACTTTATGCATGTTATGCTTATGGTTTGCTCTGTTTGTCTGGG
TTGAGGCCACTGCATCTGAGCTTTGGACCTATATGTTTGATCCTATTTTCAGTGTTGAGCTTCATTACTGAGATTCAGAGTTGGGATTTGCGATCATGA
Protein sequenceShow/hide protein sequence
MGFLSGSFMVETDSLRLVKILHGEVHDVSEVGLLMDDIRRLLHPCGSDKVLFTPRQGNKVAHVLASLARSYLDCVGLKNGLVKFLRLVWMHLSTRELYACYAYGLLCLSG
LRPLHLSFGPICLILFSVLSFITEIQSWDLRS