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Lag0010604 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010604
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:2009049..2009966
RNA-Seq ExpressionLag0010604
SyntenyLag0010604
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB66613.1 hypothetical protein L484_024909 [Morus notabilis]1.5e-0939.45Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP
        G  +RVR+VLD+TKP+RR V+++  DG  L W  L YE+LPDFC+ CG+ GH        G+           + + +S  PY  W    R+G G  RR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP

Query:  EGFGGRTSG
        E    RT G
Subjt:  EGFGGRTSG

EXB66629.1 hypothetical protein L484_024925 [Morus notabilis]1.5e-0939.45Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP
        G  +RVR+VLD+TKP+RR V+++  DG  L W  L YE+LPDFC+ CG+ GH        G+           + + +S  PY  W    R+G G  RR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP

Query:  EGFGGRTSG
        E    RT G
Subjt:  EGFGGRTSG

KAF5469007.1 hypothetical protein F2P56_013112 [Juglans regia]2.0e-0932.24Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSIESV------------LRWGLWLPSMLGSFWGLASCVSFAPYEFWRVG
        G  MRVR++LD++ PL+R  +L   D +  W  L+YERLPDFC+QCG +GHS+               L +G WL +   S           P   W+VG
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSIESV------------LRWGLWLPSMLGSFWGLASCVSFAPYEFWRVG

Query:  DGDRRPEGFGGRTSGWTSRGWTVTVAEYVPKPMSMTK----SVPVTGKGGGSDVVD--PRDKGKAVIVERAGKEITSGVKGKG
         G R  EG                     P+PM++      SVP   +G  +++V   P  +G A I ER    +T G K  G
Subjt:  DGDRRPEGFGGRTSGWTSRGWTVTVAEYVPKPMSMTK----SVPVTGKGGGSDVVD--PRDKGKAVIVERAGKEITSGVKGKG

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]3.9e-1342.48Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHS------------IESVLRWGLWLPSMLGSFWGLASCVSFAPYE-FWRV
        G  +RVR+ +DV+KPLRR ++L   DG  +WCPL YE+LPDFC++CG+IGHS              S  ++G WL + L     L   VS    E FWR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHS------------IESVLRWGLWLPSMLGSFWGLASCVSFAPYE-FWRV

Query:  GDGDRRPEGFGGR
        G   R  +  GGR
Subjt:  GDGDRRPEGFGGR

XP_024018029.1 uncharacterized protein LOC112090594 [Morus notabilis]8.9e-1039.45Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP
        G  +RVR+VLD+TKP+RR V+++  DG  L W  L YE+LPDFC+ CG+ GH        G+           + + +S  PY  W    R+G G  RR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP

Query:  EGFGGRTSG
        E    RT+G
Subjt:  EGFGGRTSG

TrEMBL top hitse value%identityAlignment
A0A6J1D765 uncharacterized protein LOC1110179021.9e-1342.48Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHS------------IESVLRWGLWLPSMLGSFWGLASCVSFAPYE-FWRV
        G  +RVR+ +DV+KPLRR ++L   DG  +WCPL YE+LPDFC++CG+IGHS              S  ++G WL + L     L   VS    E FWR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHS------------IESVLRWGLWLPSMLGSFWGLASCVSFAPYE-FWRV

Query:  GDGDRRPEGFGGR
        G   R  +  GGR
Subjt:  GDGDRRPEGFGGR

A0A6J1DVS4 uncharacterized protein LOC1110235551.3e-0960.42Show/hide
Query:  VRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSI
        VR+ ++V KPLRR +++ T DG  +WCPL YERLPDFC+ CG +GHSI
Subjt:  VRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSI

A0A6P9EH14 uncharacterized protein LOC1089842009.7e-1032.24Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSIESV------------LRWGLWLPSMLGSFWGLASCVSFAPYEFWRVG
        G  MRVR++LD++ PL+R  +L   D +  W  L+YERLPDFC+QCG +GHS+               L +G WL +   S           P   W+VG
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSIESV------------LRWGLWLPSMLGSFWGLASCVSFAPYEFWRVG

Query:  DGDRRPEGFGGRTSGWTSRGWTVTVAEYVPKPMSMTK----SVPVTGKGGGSDVVD--PRDKGKAVIVERAGKEITSGVKGKG
         G R  EG                     P+PM++      SVP   +G  +++V   P  +G A I ER    +T G K  G
Subjt:  DGDRRPEGFGGRTSGWTSRGWTVTVAEYVPKPMSMTK----SVPVTGKGGGSDVVD--PRDKGKAVIVERAGKEITSGVKGKG

W9RBJ0 CCHC-type domain-containing protein7.4e-1039.45Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP
        G  +RVR+VLD+TKP+RR V+++  DG  L W  L YE+LPDFC+ CG+ GH        G+           + + +S  PY  W    R+G G  RR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP

Query:  EGFGGRTSG
        E    RT G
Subjt:  EGFGGRTSG

W9RRS1 CCHC-type domain-containing protein7.4e-1039.45Show/hide
Query:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP
        G  +RVR+VLD+TKP+RR V+++  DG  L W  L YE+LPDFC+ CG+ GH        G+           + + +S  PY  W    R+G G  RR 
Subjt:  GAVMRVRIVLDVTKPLRRVVRLVTEDGSSL-WCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFW----RVGDGD-RRP

Query:  EGFGGRTSG
        E    RT G
Subjt:  EGFGGRTSG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGCAGTGATGAGGGTCCGAATTGTTCTTGATGTAACCAAGCCGCTTCGTCGTGTTGTTCGTTTGGTCACAGAGGATGGGTCTTCTTTATGGTGCCCTCTTTTGTA
TGAGCGGTTGCCAGATTTTTGTTTCCAGTGCGGGCGTATTGGGCATTCCATAGAGAGTGTCCTGAGGTGGGGTCTGTGGCTGCCTTCGATGCTCGGTTCCTTTTGGGGAT
TGGCTTCGTGCGTCTCCTTTGCGCCGTATGAGTTCTGGCGGGTGGGGGATGGGGACCGACGACCTGAAGGGTTTGGTGGACGGACTTCTGGTTGGACAAGCAGAGGATGG
ACTGTGACTGTGGCTGAGTATGTGCCTAAGCCTATGTCTATGACTAAGAGTGTACCGGTGACTGGGAAGGGTGGTGGGAGTGATGTTGTGGATCCTCGGGATAAGGGGAA
AGCAGTAATTGTTGAGAGGGCGGGGAAGGAGATCACTTCGGGGGTGAAGGGAAAGGGATGGAAGCGATTAGCCAGGGGTAATTTGAAAGATGTTACTAATATGCGTGTTA
GCCCTCCTGCTAATCAGAAGCGCCAGGGAGTGATGGTATGTACACCTAGGGAGATGGGGAGGGTAAACGTCGGAAAGTCTTGGAGAATGAGATGGCTTTATGTGATATGG
TTGGTCAGGATATGGCGGAGGCTGGGTCCTAGCCCCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGCAGTGATGAGGGTCCGAATTGTTCTTGATGTAACCAAGCCGCTTCGTCGTGTTGTTCGTTTGGTCACAGAGGATGGGTCTTCTTTATGGTGCCCTCTTTTGTA
TGAGCGGTTGCCAGATTTTTGTTTCCAGTGCGGGCGTATTGGGCATTCCATAGAGAGTGTCCTGAGGTGGGGTCTGTGGCTGCCTTCGATGCTCGGTTCCTTTTGGGGAT
TGGCTTCGTGCGTCTCCTTTGCGCCGTATGAGTTCTGGCGGGTGGGGGATGGGGACCGACGACCTGAAGGGTTTGGTGGACGGACTTCTGGTTGGACAAGCAGAGGATGG
ACTGTGACTGTGGCTGAGTATGTGCCTAAGCCTATGTCTATGACTAAGAGTGTACCGGTGACTGGGAAGGGTGGTGGGAGTGATGTTGTGGATCCTCGGGATAAGGGGAA
AGCAGTAATTGTTGAGAGGGCGGGGAAGGAGATCACTTCGGGGGTGAAGGGAAAGGGATGGAAGCGATTAGCCAGGGGTAATTTGAAAGATGTTACTAATATGCGTGTTA
GCCCTCCTGCTAATCAGAAGCGCCAGGGAGTGATGGTATGTACACCTAGGGAGATGGGGAGGGTAAACGTCGGAAAGTCTTGGAGAATGAGATGGCTTTATGTGATATGG
TTGGTCAGGATATGGCGGAGGCTGGGTCCTAGCCCCGCCTAG
Protein sequenceShow/hide protein sequence
MGAVMRVRIVLDVTKPLRRVVRLVTEDGSSLWCPLLYERLPDFCFQCGRIGHSIESVLRWGLWLPSMLGSFWGLASCVSFAPYEFWRVGDGDRRPEGFGGRTSGWTSRGW
TVTVAEYVPKPMSMTKSVPVTGKGGGSDVVDPRDKGKAVIVERAGKEITSGVKGKGWKRLARGNLKDVTNMRVSPPANQKRQGVMVCTPREMGRVNVGKSWRMRWLYVIW
LVRIWRRLGPSPA