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Lag0010612 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010612
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:2163975..2164361
RNA-Seq ExpressionLag0010612
SyntenyLag0010612
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON65458.1 Zinc finger, CCHC-type, partial [Trema orientale]3.0e-1545.45Show/hide
Query:  PSITSQALMATSSAN-PFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN---DRLLNLENVLCVPAIAK
        P  +  +    +S N  ++A P  V D  WYMDSGA+NHVT+   +  + ++Y GKEK+ +GNGS+LPI HIGSS   SN    + L L+NVL VP I K
Subjt:  PSITSQALMATSSAN-PFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN---DRLLNLENVLCVPAIAK

Query:  NFVSVSCWVL
        N +S+S + L
Subjt:  NFVSVSCWVL

TYJ99887.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.1e-1545.08Show/hide
Query:  NSGNQSSQG-----RNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSND
        NSG  S++G     RNN       S A + +  ANPF    ++ +D  WY ++ A NH+T+ Y++  +P EYGGK +V IGNG +L I+ IG+S L +  
Subjt:  NSGNQSSQG-----RNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSND

Query:  RLLNLENVLCVPAIAKNFVSVS
         +L+L+NVL VPAIAKN VSVS
Subjt:  RLLNLENVLCVPAIAKNFVSVS

TYK05754.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.4e-1753.68Show/hide
Query:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSVS
        L+   S N F A   +VI+  WY+DSGA+NH+T  YS+  +PSEY G EK+++GNG  L IS+IG++YL+     LNL+NVLCVP I KN VSVS
Subjt:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSVS

XP_016902197.1 PREDICTED: uncharacterized protein LOC107991581 isoform X1 [Cucumis melo]9.9e-1946.49Show/hide
Query:  NQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENV
        N++    N   +P+      ++T +A PF A P +V+DP WY+DSGA+NHVT   S+  +P+EY G EKV +GNG+ L IS++G++ L+  D+ L L+N+
Subjt:  NQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENV

Query:  LCVPAIAKNFVSVS
        LCVP IAKN +SVS
Subjt:  LCVPAIAKNFVSVS

XP_031282138.1 uncharacterized protein LOC116140680 [Pistacia vera]3.0e-1548.45Show/hide
Query:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSS--NDRLLNLENVLCVPAIAKNFVSVS
        L ++ ++   VA P++V D  WYMD GASNH+T   S+ +H S Y GK KV +GNG  +PI+H G   + S  + R+L L+N+LCVP IAKN VS+S
Subjt:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSS--NDRLLNLENVLCVPAIAKNFVSVS

TrEMBL top hitse value%identityAlignment
A0A1S4E1U6 uncharacterized protein LOC107991581 isoform X14.8e-1946.49Show/hide
Query:  NQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENV
        N++    N   +P+      ++T +A PF A P +V+DP WY+DSGA+NHVT   S+  +P+EY G EKV +GNG+ L IS++G++ L+  D+ L L+N+
Subjt:  NQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENV

Query:  LCVPAIAKNFVSVS
        LCVP IAKN +SVS
Subjt:  LCVPAIAKNFVSVS

A0A2P5CWM3 Zinc finger, CCHC-type (Fragment)1.4e-1545.45Show/hide
Query:  PSITSQALMATSSAN-PFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN---DRLLNLENVLCVPAIAK
        P  +  +    +S N  ++A P  V D  WYMDSGA+NHVT+   +  + ++Y GKEK+ +GNGS+LPI HIGSS   SN    + L L+NVL VP I K
Subjt:  PSITSQALMATSSAN-PFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN---DRLLNLENVLCVPAIAK

Query:  NFVSVSCWVL
        N +S+S + L
Subjt:  NFVSVSCWVL

A0A5D3C373 Retrovirus-related Pol polyprotein from transposon TNT 1-942.6e-1753.68Show/hide
Query:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSVS
        L+   S N F A   +VI+  WY+DSGA+NH+T  YS+  +PSEY G EK+++GNG  L IS+IG++YL+     LNL+NVLCVP I KN VSVS
Subjt:  LMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSVS

A0A803P4G6 Uncharacterized protein8.4e-1652.27Show/hide
Query:  NPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSND-RLLNLENVLCVPAIAKNFVSV
        N F+A PK +    W++DSGASNH+TS  +S    SEYGGKE + +G+GS+L ISHIG+ +L +N  +LL L+ +L VP IAKN +SV
Subjt:  NPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSND-RLLNLENVLCVPAIAKNFVSV

A0A803PPY9 Uncharacterized protein1.0e-1645.76Show/hide
Query:  NSGNQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN-DRLLN
        N G    +GR+N  +     Q      + N F+A P+ V   +W+ DSGASNH+T+  S      EYGGKE V +GNG+EL ISHIGS YL +N  R L 
Subjt:  NSGNQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSN-DRLLN

Query:  LENVLCVPAIAKNFVSVS
        L+ +L VP IAKN +S+S
Subjt:  LENVLCVPAIAKNFVSVS

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.5e-1246.58Show/hide
Query:  WYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSV
        W +DSGA++H+TS +++      Y G + V++ +GS +PISH GS+ LS+  R LNL N+L VP I KN +SV
Subjt:  WYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAIAKNFVSV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.1e-0934.43Show/hide
Query:  QSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVL
        QS+  +    +P    Q     +  +P+ AN        W +DSGA++H+TS +++      Y G + V+I +GS +PI+H GS+ L ++ R L+L  VL
Subjt:  QSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVL

Query:  CVPAIAKNFVSVSCWVLCPKTR
         VP I KN +SV  + LC   R
Subjt:  CVPAIAKNFVSVSCWVLCPKTR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTCTGGAAATCAGTCTTCACAGGGAAGAAACAATGTGGCGGCCCCATCAATTACCTCACAAGCACTCATGGCGACGTCAAGTGCAAACCCGTTTGTGGCAAACCC
AAAATCTGTTATTGATCCTATCTGGTACATGGATAGTGGAGCATCGAATCATGTTACGTCTTACTATAGTAGCAAGATTCATCCATCAGAATATGGAGGTAAGGAAAAGG
TTATTATTGGAAATGGAAGTGAGTTACCTATTTCTCACATAGGTTCAAGTTACTTGTCTTCAAATGATAGATTGTTAAATCTTGAAAATGTTTTGTGTGTGCCTGCGATA
GCAAAGAACTTTGTTAGTGTTTCTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTCTGGAAATCAGTCTTCACAGGGAAGAAACAATGTGGCGGCCCCATCAATTACCTCACAAGCACTCATGGCGACGTCAAGTGCAAACCCGTTTGTGGCAAACCC
AAAATCTGTTATTGATCCTATCTGGTACATGGATAGTGGAGCATCGAATCATGTTACGTCTTACTATAGTAGCAAGATTCATCCATCAGAATATGGAGGTAAGGAAAAGG
TTATTATTGGAAATGGAAGTGAGTTACCTATTTCTCACATAGGTTCAAGTTACTTGTCTTCAAATGATAGATTGTTAAATCTTGAAAATGTTTTGTGTGTGCCTGCGATA
GCAAAGAACTTTGTTAGTGTTTCTTGTTGGGTTTTATGCCCTAAAACTCGTAGATAG
Protein sequenceShow/hide protein sequence
MNSGNQSSQGRNNVAAPSITSQALMATSSANPFVANPKSVIDPIWYMDSGASNHVTSYYSSKIHPSEYGGKEKVIIGNGSELPISHIGSSYLSSNDRLLNLENVLCVPAI
AKNFVSVSCWVLCPKTRR