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Lag0010625 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010625
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:2475568..2476182
RNA-Seq ExpressionLag0010625
SyntenyLag0010625
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151688.1 uncharacterized protein LOC111019603 [Momordica charantia]1.4e-3548.95Show/hide
Query:  APMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWK
        A + +   ALQ + DN     A              E+QFIRDF+RYGPP+F+G+S+    VE+W+ +LEAL+  + C+D LK++G VFML+ +A  WW 
Subjt:  APMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWK

Query:  SVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT
         VA VE+H N+PI+W   KDLLYDYYFP+T+KD+KE+ FLHLT
Subjt:  SVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT

XP_022155341.1 uncharacterized protein LOC111022474 [Momordica charantia]2.7e-3442.16Show/hide
Query:  MTCGRGPRIPSNRQENQAGDINAQQGANPLIPLLQEVNPPIPPIQPGVDLSPPPPPSTPPAAPMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQ
        M   R  R  +    N  G+  A     P +P  + V PP+P       L+P   P   P   +L   EALQ + DN         +         EE Q
Subjt:  MTCGRGPRIPSNRQENQAGDINAQQGANPLIPLLQEVNPPIPPIQPGVDLSPPPPPSTPPAAPMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQ

Query:  FIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGF
        FIRDFKR+GPP F+G S+ P A E+WV +LEAL+  + C+D  K+RG +FML+ +A  WW+SVAA E+HAN P++W  FKDLLY+YYFP TV+++K   F
Subjt:  FIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGF

Query:  LHLT
        L LT
Subjt:  LHLT

XP_022155925.1 uncharacterized protein LOC111022925 [Momordica charantia]2.0e-3448.67Show/hide
Query:  STPPAAP--MLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKD
        + PP  P  +++  EALQ + DN         +  +    + EE QFIRDFKR+GPP F+G S+ P A E+WV +LEAL+  + C+D  K+RG VFML+ 
Subjt:  STPPAAP--MLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKD

Query:  DARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT
        +A  WW+SVAA E+HAN P++W  FKDLLY+YYFP TV+++K   FL LT
Subjt:  DARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]2.0e-3457.14Show/hide
Query:  PPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLY
        PP  H   P++  E++FI+DFKRYGPP+FDG+S+   AVE+W+ +LEAL+  + C D  K++G VFML+ +A  WW SVAA E++AN PI W  FK+LLY
Subjt:  PPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLY

Query:  DYYFPETVKDDKEVGFLHL
        DYY+PETVKD KE  FLHL
Subjt:  DYYFPETVKDDKEVGFLHL

XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]3.2e-3552.32Show/hide
Query:  PSTPPAAPMLITPEALQTMFDNMA---QRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFML
        P   P   +L   EALQ + +N A      A PPR H   P++  E+QFI+DFKRYGPP+FDG S+   A E WV +LEAL+  + C D  K++G VFML
Subjt:  PSTPPAAPMLITPEALQTMFDNMA---QRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFML

Query:  KDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHL
        + +A  WW S+A  E+HAN P+ W  FKDLLYDYY+PETVKD KE  FLHL
Subjt:  KDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHL

TrEMBL top hitse value%identityAlignment
A0A6J1DCW8 uncharacterized protein LOC1110196036.9e-3648.95Show/hide
Query:  APMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWK
        A + +   ALQ + DN     A              E+QFIRDF+RYGPP+F+G+S+    VE+W+ +LEAL+  + C+D LK++G VFML+ +A  WW 
Subjt:  APMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWK

Query:  SVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT
         VA VE+H N+PI+W   KDLLYDYYFP+T+KD+KE+ FLHLT
Subjt:  SVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT

A0A6J1DNV8 uncharacterized protein LOC1110229259.9e-3548.67Show/hide
Query:  STPPAAP--MLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKD
        + PP  P  +++  EALQ + DN         +  +    + EE QFIRDFKR+GPP F+G S+ P A E+WV +LEAL+  + C+D  K+RG VFML+ 
Subjt:  STPPAAP--MLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKD

Query:  DARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT
        +A  WW+SVAA E+HAN P++W  FKDLLY+YYFP TV+++K   FL LT
Subjt:  DARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT

A0A6J1DRF5 uncharacterized protein LOC1110224741.3e-3442.16Show/hide
Query:  MTCGRGPRIPSNRQENQAGDINAQQGANPLIPLLQEVNPPIPPIQPGVDLSPPPPPSTPPAAPMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQ
        M   R  R  +    N  G+  A     P +P  + V PP+P       L+P   P   P   +L   EALQ + DN         +         EE Q
Subjt:  MTCGRGPRIPSNRQENQAGDINAQQGANPLIPLLQEVNPPIPPIQPGVDLSPPPPPSTPPAAPMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQ

Query:  FIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGF
        FIRDFKR+GPP F+G S+ P A E+WV +LEAL+  + C+D  K+RG +FML+ +A  WW+SVAA E+HAN P++W  FKDLLY+YYFP TV+++K   F
Subjt:  FIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGF

Query:  LHLT
        L LT
Subjt:  LHLT

A0A6J1DUM2 uncharacterized protein LOC1110232479.9e-3557.14Show/hide
Query:  PPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLY
        PP  H   P++  E++FI+DFKRYGPP+FDG+S+   AVE+W+ +LEAL+  + C D  K++G VFML+ +A  WW SVAA E++AN PI W  FK+LLY
Subjt:  PPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLY

Query:  DYYFPETVKDDKEVGFLHL
        DYY+PETVKD KE  FLHL
Subjt:  DYYFPETVKDDKEVGFLHL

A0A6J1DXQ7 uncharacterized protein LOC1110250881.5e-3552.32Show/hide
Query:  PSTPPAAPMLITPEALQTMFDNMA---QRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFML
        P   P   +L   EALQ + +N A      A PPR H   P++  E+QFI+DFKRYGPP+FDG S+   A E WV +LEAL+  + C D  K++G VFML
Subjt:  PSTPPAAPMLITPEALQTMFDNMA---QRNARPPRNHNWVPENAEESQFIRDFKRYGPPSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFML

Query:  KDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHL
        + +A  WW S+A  E+HAN P+ W  FKDLLYDYY+PETVKD KE  FLHL
Subjt:  KDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTGTGGTCGTGGACCTAGAATCCCATCTAATAGGCAAGAGAATCAGGCGGGTGATATCAATGCTCAGCAAGGGGCCAATCCTCTGATTCCCCTTTTGCAGGAAGT
TAATCCCCCGATTCCTCCTATTCAGCCCGGAGTTGACCTTTCGCCCCCTCCTCCTCCTTCGACCCCTCCTGCAGCTCCTATGTTGATCACTCCGGAAGCCCTCCAGACCA
TGTTCGATAACATGGCCCAGAGAAATGCCAGGCCACCGCGGAACCATAATTGGGTACCTGAGAACGCAGAGGAATCCCAGTTCATTAGAGACTTCAAGCGCTACGGGCCT
CCCTCTTTTGACGGGCAATCCGATAATCCTGTGGCAGTAGAGCAGTGGGTCGCTGATTTAGAGGCACTGTTTGACCTCATGAGCTGTAATGATCCCCTGAAGATTAGAGG
AACTGTCTTCATGCTCAAGGATGACGCTCGCATGTGGTGGAAGTCTGTGGCAGCTGTCGAAGAGCATGCTAATCAGCCGATTTCATGGGAAATGTTCAAAGACCTGTTGT
ACGATTATTACTTCCCGGAGACAGTCAAAGATGACAAAGAAGTTGGGTTCCTCCATTTGACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTGTGGTCGTGGACCTAGAATCCCATCTAATAGGCAAGAGAATCAGGCGGGTGATATCAATGCTCAGCAAGGGGCCAATCCTCTGATTCCCCTTTTGCAGGAAGT
TAATCCCCCGATTCCTCCTATTCAGCCCGGAGTTGACCTTTCGCCCCCTCCTCCTCCTTCGACCCCTCCTGCAGCTCCTATGTTGATCACTCCGGAAGCCCTCCAGACCA
TGTTCGATAACATGGCCCAGAGAAATGCCAGGCCACCGCGGAACCATAATTGGGTACCTGAGAACGCAGAGGAATCCCAGTTCATTAGAGACTTCAAGCGCTACGGGCCT
CCCTCTTTTGACGGGCAATCCGATAATCCTGTGGCAGTAGAGCAGTGGGTCGCTGATTTAGAGGCACTGTTTGACCTCATGAGCTGTAATGATCCCCTGAAGATTAGAGG
AACTGTCTTCATGCTCAAGGATGACGCTCGCATGTGGTGGAAGTCTGTGGCAGCTGTCGAAGAGCATGCTAATCAGCCGATTTCATGGGAAATGTTCAAAGACCTGTTGT
ACGATTATTACTTCCCGGAGACAGTCAAAGATGACAAAGAAGTTGGGTTCCTCCATTTGACCTAG
Protein sequenceShow/hide protein sequence
MTCGRGPRIPSNRQENQAGDINAQQGANPLIPLLQEVNPPIPPIQPGVDLSPPPPPSTPPAAPMLITPEALQTMFDNMAQRNARPPRNHNWVPENAEESQFIRDFKRYGP
PSFDGQSDNPVAVEQWVADLEALFDLMSCNDPLKIRGTVFMLKDDARMWWKSVAAVEEHANQPISWEMFKDLLYDYYFPETVKDDKEVGFLHLT