; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010699 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010699
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:4077004..4077550
RNA-Seq ExpressionLag0010699
SyntenyLag0010699
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN65684.1 hypothetical protein Csa_019689 [Cucumis sativus]8.9e-2062.35Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK
        +  TRKG+  M ++LR+MK++ADNLGQ  S +  R+LISQVLLGLDE YNPV+ +IQG+  ISW ++QS+LLIFEKRL+ QNSQK
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK

XP_022148963.1 uncharacterized protein LOC111017501 [Momordica charantia]1.1e-2077.14Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSE
        +  TRKGSLKM++FLRVMKSHADNLGQ GS V  RSLISQVLLGLDEEYNPVV+ IQG+ GISW E+Q+E
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSE

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.1e-2163.53Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK
        +  T KGSL+M E+L++MKSHADNL   GSSVS+R L+SQVL GLDEEYNP+V  +QG+  +SWSE+ +ELL +EKRLE QNS K
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK

XP_038896600.1 uncharacterized protein LOC120084860 [Benincasa hispida]3.1e-2066.28Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKM
        +  TRKG  KMS +L++MK H+DNL QT S VS R+LISQVLLGLDEEYN VV  IQG+ GISW ++QSELL +EKRLE QNS K+
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKM

XP_038905164.1 uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]8.9e-2052.25Show/hide
Query:  MPKIFGHKFKSYLECSQELRRIILDRYSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIF
        +P++FG   +S +E    LR +    +  TRKG+LKM E+L+ MK + DNL Q GS +  R+L+SQVLLGLDEEYN +V+MIQGR  +SW ++QSELL++
Subjt:  MPKIFGHKFKSYLECSQELRRIILDRYSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIF

Query:  EKRLELQNSQK
        E+RLE Q++QK
Subjt:  EKRLELQNSQK

TrEMBL top hitse value%identityAlignment
A0A0A0LXB7 Uncharacterized protein4.3e-2062.35Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK
        +  TRKG+  M ++LR+MK++ADNLGQ  S +  R+LISQVLLGLDE YNPV+ +IQG+  ISW ++QS+LLIFEKRL+ QNSQK
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK

A0A5A7SIT7 Uncharacterized protein2.4e-1862.35Show/hide
Query:  TRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKMEE
        TRKG+ KM E+L VMK++ DNLGQ GS V  R+LISQVLLGLDE YN V+ +IQG+  ISW ++QS+LLIFEK L+ QN+QK ++
Subjt:  TRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKMEE

A0A5D3E3L7 Uncharacterized protein3.1e-1855.1Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKMEEDEFLMEINAI
        +  TR+G+ KM ++LR+MK +ADNLGQ GS V  R LISQVLLGLDE YNPV ++IQG+  ISW ++QSELLIFE  +E+    KME +  LM  + +
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQKMEEDEFLMEINAI

A0A6J1D5J0 uncharacterized protein LOC1110175015.1e-2177.14Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSE
        +  TRKGSLKM++FLRVMKSHADNLGQ GS V  RSLISQVLLGLDEEYNPVV+ IQG+ GISW E+Q+E
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSE

A0A6J1DCW4 uncharacterized protein LOC1110195981.0e-2163.53Show/hide
Query:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK
        +  T KGSL+M E+L++MKSHADNL   GSSVS+R L+SQVL GLDEEYNP+V  +QG+  +SWSE+ +ELL +EKRLE QNS K
Subjt:  YSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)9.6e-0428.71Show/hide
Query:  LECSQELRRIILDRYSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGI-SWSEVQSELLIFEKRLELQNSQK
        L+   ELR   +D         L + E+ + +KS +D L    S +S R L+  +L GL E+Y+ ++++I+ ++   S++E +S LL+ E RL  ++   
Subjt:  LECSQELRRIILDRYSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGI-SWSEVQSELLIFEKRLELQNSQK

Query:  M
        +
Subjt:  M


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAAGATCTTTGGACATAAATTCAAGAGCTATTTGGAGTGTAGTCAAGAGCTAAGGAGGATTATCTTAGACAGGTATTCCAACACTCGAAAAGGTTCTCTTAAGAT
GTCTGAGTTTTTGCGAGTCATGAAGTCTCATGCAGATAACTTGGGTCAAACGGGAAGTTCGGTCTCCATTAGGTCCTTAATATCTCAAGTTCTTTTGGGGTTAGATGAAG
AATATAACCCGGTGGTGTCCATGATTCAAGGACGCACTGGAATTTCGTGGTCAGAAGTGCAATCGGAGCTACTAATTTTTGAGAAGAGGTTAGAGCTACAAAATTCACAG
AAAATGGAGGAAGATGAGTTTCTAATGGAAATCAACGCAATAACAATAATCACACCAATCAAAGCAGTCGTCAACCTTTTAGTCAAGGGCAAAGAGGGGGCAGTAGAAGA
GACAGAGGAAGAGGTCGATGGAACAATGGTGGAACAATCGCCCGACTTGTCAAGTGTGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAAGATCTTTGGACATAAATTCAAGAGCTATTTGGAGTGTAGTCAAGAGCTAAGGAGGATTATCTTAGACAGGTATTCCAACACTCGAAAAGGTTCTCTTAAGAT
GTCTGAGTTTTTGCGAGTCATGAAGTCTCATGCAGATAACTTGGGTCAAACGGGAAGTTCGGTCTCCATTAGGTCCTTAATATCTCAAGTTCTTTTGGGGTTAGATGAAG
AATATAACCCGGTGGTGTCCATGATTCAAGGACGCACTGGAATTTCGTGGTCAGAAGTGCAATCGGAGCTACTAATTTTTGAGAAGAGGTTAGAGCTACAAAATTCACAG
AAAATGGAGGAAGATGAGTTTCTAATGGAAATCAACGCAATAACAATAATCACACCAATCAAAGCAGTCGTCAACCTTTTAGTCAAGGGCAAAGAGGGGGCAGTAGAAGA
GACAGAGGAAGAGGTCGATGGAACAATGGTGGAACAATCGCCCGACTTGTCAAGTGTGTGGTAA
Protein sequenceShow/hide protein sequence
MPKIFGHKFKSYLECSQELRRIILDRYSNTRKGSLKMSEFLRVMKSHADNLGQTGSSVSIRSLISQVLLGLDEEYNPVVSMIQGRTGISWSEVQSELLIFEKRLELQNSQ
KMEEDEFLMEINAITIITPIKAVVNLLVKGKEGAVEETEEEVDGTMVEQSPDLSSVW