CuGenDBv2

Gene ID	Lag0010707
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr1:4239098..4244131
RNA-Seq Expression	Lag0010707
Synteny	Lag0010707
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

8.5e-20

67.09

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSWQQLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-04

43.33

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Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]

2.2e-04

43.33

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Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

KAA0046415.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-04

43.33

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Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-19

65.82

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Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-04

43.33

Show/hide

Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

2.5e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

8.3e-05

43.33

Show/hide

Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

A0A5A7SMH8 Gag/pol protein

1.2e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

A0A5A7TU93 Gag/pol protein

4.1e-20

67.09

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Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSWQQLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

A0A5A7TU93 Gag/pol protein

8.3e-05

43.33

Show/hide

Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

A0A5A7TU93 Gag/pol protein

1.2e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

A0A5A7V4M1 Gag/pol protein

4.9e-05

43.55

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Query:  LSMSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        L M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  LSMSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

A0A5A7V4M1 Gag/pol protein

1.2e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

A0A5D3CPJ6 Gag/pol protein

8.3e-05

43.33

Show/hide

Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+ +NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

A0A5D3CPJ6 Gag/pol protein

1.2e-19

65.82

Show/hide

Query:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG
        HC  +G+  R+C             KYDLLVLETCLVENDDSAWI+DSGATNHVCSSFQG+SSW+QLE  EMT++VGTG
Subjt:  HCLAKGNIFRDC-------------KYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLEADEMTLKVGTG

A0A5D3DS88 Gag/pol protein

1.8e-04

43.33

Show/hide

Query:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD
        M+S+ +++L  +KL   NYA+WK+  NT+ +IDDLR VL  E PQ   +N+ R V + Y+
Subjt:  MSSSIVSLLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYD

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGACTGGGTGAAACTCTCTACAAACCACAAGGCTTGATGTCTAACACTCTCAAGTTAGAATTTGGTCATCTAAGAAGGACCTCGGACATCCCTACTCATTGGCGTCG
AGCCAGGGTTCTGTCACCACCCTTTTCTTCCAATCGGTTTCGAGGTCAAAACAACCGATTAGGTGCGAAGAAGACTCGTCAACAACAACTGGCGCGTGACTTGGAACGAC
CTCTGTTTTTCCAGAAATGCGGTCGCATTTCAATTTTGCCTTCCCAGAAATACGGTCGCATTTATGGGGAATTTCAGCTTTTCCTCTCAATGTCTTCCTCAATTGTCTCT
CTTCTTAAAAATGAGAAATTAACCGACGCAAATTACGCAACGTGGAAATCTAACCTGAATACGATTCCGGTTATAGATGATCTAAGATCAGTCTTAACTGGGGAATCTCC
TCAATCCCAAATTTCTAATTCATTAAGAAATGTTCATGATGAATATGACACAAAACACTGCCTAGCAAAAGGGAATATTTTCAGAGACTGTAAATATGATTTACTTGTCT
TAGAAACATGTTTAGTGGAAAATGATGATTCTGCCTGGATATTGGATTCAGGGGCCACCAACCATGTTTGTTCTTCCTTTCAAGGAATGAGTTCCTGGCAACAACTTGAA
GCTGATGAGATGACTCTCAAAGTAGGAACAGGAGAGGACTTGAACAATGGGATCTCGCCCTCTCACTGGCCCGAGAGGGACTTTCTGTTTAATGGTTGGACCATAAACAG
GTCTATATTCGTGGACACAGAAATGTTCTACAGTGAGAAGAGTTCTCAGCTGTGGGTCTGTTCACACGTAACTTCGGCTTCGATGGATTCTTGGAGCTTGAAGTCCCTTG
AGTTTGAAAGAGTCTTCAGTCTTCAAGAAGTGTTTAGTACTTGGAAACTTGTAGATTCAAAGAGTCTTCAGTCTTCCGTTTTGAGGAAAATTTCTCTGAATTCTCTAAGT
ACAACGTCTTTCAACACGAGTACAAGGACGTGTTCCTTGAGTTGGGACATGTTCCTTGGACTTGTGTCGCCTTGCGCCTTTCAGCACGAGTGCAAGGACGTGTTCCTTGA
GTTGGGACATGTTCCTTGGACTTGTGTCGCCGCCACGCCTTTCAGCACGAGTGCAAGGACGTGTTCCTTGAGTTGGGACATGTTCCTTGGACTTGTGTCGCCTTGCGCCT
TTCAGCACGAGTGCAAGGACGTGTTCCTTGAGTTGGGACATGTTCCTTGGACTTGTGTCGCCGCCACGCCTTTCAGCACGAGTGCACGAACATGTTCCTTGAGTTGGGAT
ATGTTTCTTGGACTTGTGTCGCCGCCACACCTTTCAGCACGAGTGCAAGGACATGTTCCTTGA

mRNA sequence

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Protein sequence

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MGLGETLYKPQGLMSNTLKLEFGHLRRTSDIPTHWRRARVLSPPFSSNRFRGQNNRLGAKKTRQQQLARDLERPLFFQKCGRISILPSQKYGRIYGEFQLFLSMSSSIVS
LLKNEKLTDANYATWKSNLNTIPVIDDLRSVLTGESPQSQISNSLRNVHDEYDTKHCLAKGNIFRDCKYDLLVLETCLVENDDSAWILDSGATNHVCSSFQGMSSWQQLE
ADEMTLKVGTGEDLNNGISPSHWPERDFLFNGWTINRSIFVDTEMFYSEKSSQLWVCSHVTSASMDSWSLKSLEFERVFSLQEVFSTWKLVDSKSLQSSVLRKISLNSLS
TTSFNTSTRTCSLSWDMFLGLVSPCAFQHECKDVFLELGHVPWTCVAATPFSTSARTCSLSWDMFLGLVSPCAFQHECKDVFLELGHVPWTCVAATPFSTSARTCSLSWD
MFLGLVSPPHLSARVQGHVP

Lag0010707 (gene) of Sponge gourd (AG-4) v1 genome