; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010716 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010716
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:4545895..4546926
RNA-Seq ExpressionLag0010716
SyntenyLag0010716
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE9446591.1 hypothetical protein C3L33_21514, partial [Rhododendron williamsianum]2.4e-1026.53Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF
        M E + + L R  +  +  + + I   V+E   +D    L+G+L++ R F+R A + TM   W S                       +  V   G W F
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK
        ++ +L+  RW   +K+   +  + DFW+Q+ GLP++C  + + ++I +R+G +  E  +V  KG    +++R++V + L + L R G I++ EG+K
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK

KAE9449384.1 hypothetical protein C3L33_18717, partial [Rhododendron williamsianum]4.2e-1026.02Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF
        M + + + L++  +  +  + + I   ++E   +D    L+G+L++ R F+R A + TM   W S                       +  V   G W F
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK
        ++ +L+  RW   +K+      + DFW+Q+ GLP++C  Q + + I +R+G +  E  +V  KG    ++IR++V + L + L R G +V+ +GVK
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK

KCW56306.1 hypothetical protein EUGRSUZ_I02046 [Eucalyptus grandis]3.2e-1030.72Show/hide
Query:  LIGELMSSRRFNRDAFRQTMLNAWQSSMM---------------------YVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQ
        LIG+L  + + N  AF+ TM   W+   +                      V  QG W F ++LL+   W P I       K C+FWV IHGLP +   +
Subjt:  LIGELMSSRRFNRDAFRQTMLNAWQSSMM---------------------YVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQ

Query:  TVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEG
         V+  +   +G ++  E ++E KG    K  + +V LDLT  L+ G I  N G
Subjt:  TVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEG

PQQ04601.1 uncharacterized protein Pyn_40319 [Prunus yedoensis var. nudiflora]9.3e-1830.59Show/hide
Query:  VKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFW
        VK  D    + CL+G+L++SR FNR A  +T+  +W                      +  +  V + G WLF+D++ +  RW   ++  +     C FW
Subjt:  VKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFW

Query:  VQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY
        +Q H LP DCRG+  V LI  R+G+++  +   E  G  +Q++IR++V +D +K L RG+++ + G K++
Subjt:  VQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY

PQQ05662.1 uncharacterized protein Pyn_36355 [Prunus yedoensis var. nudiflora]7.6e-2029.95Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLF
        M+  +  IL R ++ +   E + I  EVK  D    + CL+G+L++SR FNR A  +T+  +W                      +  +  V + G WLF
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY
        +D++ +  RW   ++  +     C FW+Q H LP DCRG+  V LI  R+G+++  +   E  G  +Q++IR++V +D +K L RG+++ + G K++
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY

TrEMBL top hitse value%identityAlignment
A0A059ARH8 CCHC-type domain-containing protein1.5e-1030.72Show/hide
Query:  LIGELMSSRRFNRDAFRQTMLNAWQSSMM---------------------YVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQ
        LIG+L  + + N  AF+ TM   W+   +                      V  QG W F ++LL+   W P I       K C+FWV IHGLP +   +
Subjt:  LIGELMSSRRFNRDAFRQTMLNAWQSSMM---------------------YVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQ

Query:  TVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEG
         V+  +   +G ++  E ++E KG    K  + +V LDLT  L+ G I  N G
Subjt:  TVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEG

A0A314YDX0 CCHC-type domain-containing protein3.7e-2029.95Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLF
        M+  +  IL R ++ +   E + I  EVK  D    + CL+G+L++SR FNR A  +T+  +W                      +  +  V + G WLF
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY
        +D++ +  RW   ++  +     C FW+Q H LP DCRG+  V LI  R+G+++  +   E  G  +Q++IR++V +D +K L RG+++ + G K++
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY

A0A314YHJ0 CCHC-type domain-containing protein4.5e-1830.59Show/hide
Query:  VKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFW
        VK  D    + CL+G+L++SR FNR A  +T+  +W                      +  +  V + G WLF+D++ +  RW   ++  +     C FW
Subjt:  VKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAW----------------------QSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFW

Query:  VQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY
        +Q H LP DCRG+  V LI  R+G+++  +   E  G  +Q++IR++V +D +K L RG+++ + G K++
Subjt:  VQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNY

A0A6A4KTL4 Uncharacterized protein (Fragment)1.2e-1026.53Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF
        M E + + L R  +  +  + + I   V+E   +D    L+G+L++ R F+R A + TM   W S                       +  V   G W F
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK
        ++ +L+  RW   +K+   +  + DFW+Q+ GLP++C  + + ++I +R+G +  E  +V  KG    +++R++V + L + L R G I++ EG+K
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK

A0A6A4KZC6 Uncharacterized protein (Fragment)2.0e-1026.02Show/hide
Query:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF
        M + + + L++  +  +  + + I   ++E   +D    L+G+L++ R F+R A + TM   W S                       +  V   G W F
Subjt:  MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQS----------------------SMMYVQKQGLWLF

Query:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK
        ++ +L+  RW   +K+      + DFW+Q+ GLP++C  Q + + I +R+G +  E  +V  KG    ++IR++V + L + L R G +V+ +GVK
Subjt:  EDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVR-GLIVVNEGVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G17920.1 nucleic acid binding;zinc ion binding4.8e-0423.66Show/hide
Query:  VDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGK
        +  L + W L   +    R   D + Q +  + +  ++ VQ++  WLF +  + + RW PA     +     D WVQ+ G+P+    +     I Q +G 
Subjt:  VDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGK

Query:  ITDEEGEVEIKGVHQQKFIRLKVELDLTKQL
        I   +         Q  +IR++V + +T  L
Subjt:  ITDEEGEVEIKGVHQQKFIRLKVELDLTKQL

AT3G31430.1 unknown protein8.4e-0930Show/hide
Query:  GELMSSRRFNRDAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIK
        G +M  R+F+        +   + S+  V ++G W F D +++  RW P I     IP    FWVQI G+P+    + VV+ I + +G++ D +  VE+ 
Subjt:  GELMSSRRFNRDAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIK

Query:  GVHQQKFIRLKVELDLTKQL
         V +  F R+ +  D+T  L
Subjt:  GVHQQKFIRLKVELDLTKQL

AT5G18636.1 unknown protein2.8e-0427.52Show/hide
Query:  DAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLK
        DA     + A +  +M VQ++  WLF +  +   RW   +    ++    D WVQI G+P     +  V  I Q +G+I   +         Q  FIR++
Subjt:  DAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLK

Query:  VELDLTKQL
        V   +T +L
Subjt:  VELDLTKQL

AT5G25200.1 unknown protein1.3e-0428.44Show/hide
Query:  DAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLK
        DA     L A +  +M VQ++  WLF +  +   RW   +    ++    D WVQI G+P     +  V  I Q +G+I   +         Q  FIR++
Subjt:  DAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLK

Query:  VELDLTKQL
        V   +T +L
Subjt:  VELDLTKQL

AT5G25600.1 BEST Arabidopsis thaliana protein match is: nucleic acid binding5.6e-0532.29Show/hide
Query:  VQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKIT----DEEGEVEIKGVHQQKFIRLKVELDLTKQL
        V  +G WLF    +   RW      RAD     D WVQ+ G+P      T V+ I   +G +T    DEE   +I       FIR+KV + +T ++
Subjt:  VQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHGLPYDCRGQTVVKLIVQRVGKIT----DEEGEVEIKGVHQQKFIRLKVELDLTKQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAATCCGTTGAGGATATTCTGGCGAGGCTTGAGATTGAGGAGAAGAATTGTGAGACTATGAGCATTACCAAGGAGGTAAAGGAAGTCGATCAGCTGGATAAGAA
ATGGTGTCTGATTGGCGAACTGATGAGTTCGAGAAGATTCAATAGGGATGCATTTAGACAGACGATGTTGAATGCGTGGCAGTCGTCGATGATGTATGTGCAGAAACAAG
GGTTGTGGCTCTTTGAGGACAATCTGCTTGTTACAGCGAGATGGACCCCTGCGATTAAGTCAAGAGCAGATATACCAAAGAAATGTGACTTCTGGGTCCAAATACACGGG
CTCCCATATGATTGTCGGGGGCAGACGGTGGTTAAGCTAATAGTGCAGCGGGTGGGGAAGATTACGGATGAGGAAGGAGAGGTAGAGATAAAAGGAGTCCATCAACAAAA
GTTCATCCGATTGAAGGTGGAGCTGGATCTAACAAAACAACTTGTGAGGGGGTTGATTGTGGTGAATGAGGGAGTAAAGAATTATCCCAATGGTTTGAAAATCGTTGGCA
TTGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAATCCGTTGAGGATATTCTGGCGAGGCTTGAGATTGAGGAGAAGAATTGTGAGACTATGAGCATTACCAAGGAGGTAAAGGAAGTCGATCAGCTGGATAAGAA
ATGGTGTCTGATTGGCGAACTGATGAGTTCGAGAAGATTCAATAGGGATGCATTTAGACAGACGATGTTGAATGCGTGGCAGTCGTCGATGATGTATGTGCAGAAACAAG
GGTTGTGGCTCTTTGAGGACAATCTGCTTGTTACAGCGAGATGGACCCCTGCGATTAAGTCAAGAGCAGATATACCAAAGAAATGTGACTTCTGGGTCCAAATACACGGG
CTCCCATATGATTGTCGGGGGCAGACGGTGGTTAAGCTAATAGTGCAGCGGGTGGGGAAGATTACGGATGAGGAAGGAGAGGTAGAGATAAAAGGAGTCCATCAACAAAA
GTTCATCCGATTGAAGGTGGAGCTGGATCTAACAAAACAACTTGTGAGGGGGTTGATTGTGGTGAATGAGGGAGTAAAGAATTATCCCAATGGTTTGAAAATCGTTGGCA
TTGCTTAG
Protein sequenceShow/hide protein sequence
MEESVEDILARLEIEEKNCETMSITKEVKEVDQLDKKWCLIGELMSSRRFNRDAFRQTMLNAWQSSMMYVQKQGLWLFEDNLLVTARWTPAIKSRADIPKKCDFWVQIHG
LPYDCRGQTVVKLIVQRVGKITDEEGEVEIKGVHQQKFIRLKVELDLTKQLVRGLIVVNEGVKNYPNGLKIVGIA