; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010720 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010720
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:4605831..4606200
RNA-Seq ExpressionLag0010720
SyntenyLag0010720
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]1.4e-2278.57Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE++R ERARPSD +KMYGIE+LKKLGATVF+GS DPADAEVWLNMLEKCFDVMSCP+E
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-2287.1Show/hide
Query:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        RSAQE++R ERARPSDPEKMYGIERLKKLGATVFEGS DPAD +VWLNMLEKCFDVMSC +E
Subjt:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]2.4e-2287.1Show/hide
Query:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        RSAQE++R ERARPSDPEKMYGIERLKKLGATVFEGS DPAD +VWLNMLEKCFDVMSC +E
Subjt:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

XP_008448403.1 PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]5.4e-2277.14Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE+ R ER  PSDPEKMYGIERLKKLGATVFEGS DPA+AEVWLNMLEKCFDVM+CP++
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

XP_016899851.1 PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]1.4e-2278.57Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE++R ERARPSD +KMYGIE+LKKLGATVF+GS DPADAEVWLNMLEKCFDVMSCP+E
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

TrEMBL top hitse value%identityAlignment
A0A1S4DV40 uncharacterized protein LOC1034876806.8e-2378.57Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE++R ERARPSD +KMYGIE+LKKLGATVF+GS DPADAEVWLNMLEKCFDVMSCP+E
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

A0A5A7UAH6 CCHC-type domain-containing protein6.8e-2378.57Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE++R ERARPSD +KMYGIE+LKKLGATVF+GS DPADAEVWLNMLEKCFDVMSCP+E
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

A0A5A7VMG9 Reverse transcriptase1.2e-2287.1Show/hide
Query:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        RSAQE++R ERARPSDPEKMYGIERLKKLGATVFEGS DPAD +VWLNMLEKCFDVMSC +E
Subjt:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

A0A5D3BMJ4 Retrotrans_gag domain-containing protein2.6e-2277.14Show/hide
Query:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        E G     RSAQE+ R ER  PSDPEKMYGIERLKKLGATVFEGS DPA+AEVWLNMLEKCFDVM+CP++
Subjt:  EYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

A0A5D3DX39 Reverse transcriptase1.2e-2287.1Show/hide
Query:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE
        RSAQE++R ERARPSDPEKMYGIERLKKLGATVFEGS DPAD +VWLNMLEKCFDVMSC +E
Subjt:  RSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAGTTAGTGCTAAGAAGAATCCAGGAAGTAAACGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGATCTGCACAGGA
GGTCAATAGGTCAGAGAGAGCAAGGCCTAGTGATCCAGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCATGGATCCAGCTG
ACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCTGAGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAGTTAGTGCTAAGAAGAATCCAGGAAGTAAACGGTTAGACGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTATTGTTGAGAGATCTGCACAGGA
GGTCAATAGGTCAGAGAGAGCAAGGCCTAGTGATCCAGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAGCCACAGTGTTTGAGGGTTCCATGGATCCAGCTG
ACGCCGAGGTCTGGTTAAATATGCTGGAGAAATGCTTCGACGTGATGAGTTGTCCTGAGGAGTGA
Protein sequenceShow/hide protein sequence
MVVSAKKNPGSKRLDVGSVQIELAEYGPSIVERSAQEVNRSERARPSDPEKMYGIERLKKLGATVFEGSMDPADAEVWLNMLEKCFDVMSCPEE