; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010723 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010723
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:4646455..4657349
RNA-Seq ExpressionLag0010723
SyntenyLag0010723
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain
IPR012337 - Ribonuclease H-like superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.1e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.1e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.1e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.1e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

TrEMBL top hitse value%identityAlignment
A0A5A7SNE6 DNA/RNA polymerases superfamily protein2.0e-12767.61Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGH+GIW I       T+FIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP----------------------------------SYQSSIGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSD
        LYVD+IVSQ+GV VSI+S RDP                                  +YQSSIGM P+EALYGRPCRTPVCWNEVGERKLVG ELVQ+ ++
Subjt:  LYVDRIVSQHGVLVSIISYRDP----------------------------------SYQSSIGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSD

Query:  NVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVERVGPATYRLELPAELARIHDVFHVSMLRKYIPDP
        N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI +RVGPA Y LELP ELARIHDVFHVSMLRKYIPDP
Subjt:  NVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVERVGPATYRLELPAELARIHDVFHVSMLRKYIPDP

Query:  SHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        SHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  SHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

A0A5A7U2V7 Reverse transcriptase2.0e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

A0A5A7UUL6 Reverse transcriptase2.0e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

A0A5D3BHI1 Reverse transcriptase2.0e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

A0A5D3BS67 Reverse transcriptase2.0e-12763.4Show/hide
Query:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK
        MYRTLKKTYWW GMK+EIA Y DRCLICQQVKPVRQRPGG LNPLPVPEWKWEHITMDF+FGLPRTSSGHDGIW I       TRFIPIK TSTLDQLA+
Subjt:  MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAK

Query:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF
        LYVD+IVSQ+GV VSI+S RDP                                                                   +YQSSIGM P+
Subjt:  LYVDRIVSQHGVLVSIISYRDP-------------------------------------------------------------------SYQSSIGMVPF

Query:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER
        EALYGRPCRTPVCWNEVGERKLVGPELVQ+T++N+KLIR NL+ AQ+RQKSY DKRRR+LEFQVGD                             QI ER
Subjt:  EALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGD-----------------------------QIVER

Query:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE
        VGPA YRLELP ELARIHDVFHVSMLRKYIPDPSHVLQ QP+ELKEDLSY EE VQILD KEQVLRNKTIPL+KVLWRHHG EE T E
Subjt:  VGPATYRLELPAELARIHDVFHVSMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.1e-1025.12Show/hide
Query:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI
        + + W G++++I  Y   C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++ +  RF      +P   + T +Q A+++  R+
Subjt:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI

Query:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI
        ++  G    II+  D  + S           F   +  P R           + V   L  V S +      ++ + Q+   + +    +   F    +I
Subjt:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI

Query:  VERVGPATYRLELPA
        V R  PA   LELP+
Subjt:  VERVGPATYRLELPA

P0CT41 Transposon Tf2-12 polyprotein1.1e-1025.12Show/hide
Query:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI
        + + W G++++I  Y   C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++ +  RF      +P   + T +Q A+++  R+
Subjt:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI

Query:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI
        ++  G    II+  D  + S           F   +  P R           + V   L  V S +      ++ + Q+   + +    +   F    +I
Subjt:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI

Query:  VERVGPATYRLELPA
        V R  PA   LELP+
Subjt:  VERVGPATYRLELPA

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.5e-1238.05Show/hide
Query:  YWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAKLYVDRIVS
        Y+WP ++  I  Y   C+ CQ +K  R R  GLL PLP+ E +W  I+MDF+ GLP TS+  + I  +         FI  + T    QL  L    I S
Subjt:  YWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAKLYVDRIVS

Query:  QHGVLVSIISYRD
         HG   +I S RD
Subjt:  QHGVLVSIISYRD

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.5e-1238.05Show/hide
Query:  YWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAKLYVDRIVS
        Y+WP ++  I  Y   C+ CQ +K  R R  GLL PLP+ E +W  I+MDF+ GLP TS+  + I  +         FI  + T    QL  L    I S
Subjt:  YWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEI-------TRFIPIKATSTLDQLAKLYVDRIVS

Query:  QHGVLVSIISYRD
         HG   +I S RD
Subjt:  QHGVLVSIISYRD

Q9UR07 Transposon Tf2-11 polyprotein1.1e-1025.12Show/hide
Query:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI
        + + W G++++I  Y   C  CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++ +  RF      +P   + T +Q A+++  R+
Subjt:  KTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEIT-RF------IPIKATSTLDQLAKLYVDRI

Query:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI
        ++  G    II+  D  + S           F   +  P R           + V   L  V S +      ++ + Q+   + +    +   F    +I
Subjt:  VSQHGVLVSIISYRDPSYQSS-----IGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQI

Query:  VERVGPATYRLELPA
        V R  PA   LELP+
Subjt:  VERVGPATYRLELPA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGAACTCTGAAGAAAACTTATTGGTGGCCTGGTATGAAGCGGGAGATAGCTGGATATTTCGATAGATGTTTGATCTGTCAACAGGTTAAACCAGTGAGACAGAG
GCCAGGAGGACTCCTTAATCCACTACCAGTGCCGGAATGGAAGTGGGAGCATATTACCATGGATTTTATGTTTGGATTACCTCGTACTTCTAGTGGACATGATGGTATAT
GGGAGATAACACGGTTTATACCAATTAAAGCGACGTCTACACTAGATCAGCTAGCTAAGCTATACGTCGACAGGATTGTGAGTCAACATGGAGTGCTAGTGTCTATAATT
TCATATAGGGATCCAAGCTACCAGTCTAGTATCGGCATGGTACCATTCGAGGCTTTGTATGGCAGACCATGCAGGACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGAAA
GCTAGTCGGTCCTGAGTTGGTACAAGTTACGTCAGACAATGTTAAGCTGATTAGAGCGAACCTGAAAATAGCTCAGGAACGACAGAAGAGCTATGTAGATAAGCGACGAA
GAGACTTAGAGTTCCAGGTTGGAGATCAGATAGTAGAACGAGTTGGACCAGCAACCTATAGACTTGAGTTGCCAGCAGAACTCGCTCGAATACATGATGTTTTCCATGTG
TCCATGTTGAGGAAATATATTCCAGATCCATCCCATGTGTTGCAAGTGCAACCGATCGAGCTGAAAGAAGACTTGAGTTATAAGGAGGAAGCGGTTCAGATCCTCGACAT
GAAGGAGCAAGTTTTGAGGAACAAAACGATCCCACTCGTGAAAGTTCTTTGGAGACATCATGGAGTAGAGGAGGAAACCGGGGAGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGCACAGGATTTTCGAGCAAAGTAGGG
GGATCTCTGGTTTTCTCTGGTTTTCGAGCATTATGGAGTGTACAAGTTCAATCCGAAGCTCTATTTGGTATGGTAGAGATCGAGCCCTCGGTGCCTGATACACTGCCAAC
GTCTACTGAAAGTTCCAGAGCAAGCTCCAGTACGTGGGTGGAGTTATATATTGAGTCTGTTCATATTGTTATTTTCCAAACCGAGTATGTCAGGACTACACCCCGTGAGG
GTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGTGACTGTGTTAGGGATAGCCAGTTGCCTAGTGCTTGATCGG
GCCAGAGCCATTCGAGCGTATGCTTTTCCAATGTTTGATGAGTTAAATCCAGGAATTGCATGTTCTCAAATTGAGGCAGCAAATTTTGAAATGAAACCGGTAATGTTTCA
GATGCTGCAAACCGTGGGTCAATTCCATGGGTTTAGGCAACTTGAGGATGAAACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATG
GTTTGCCTCATTGTATCCAAATGGAAACGTTCTACAATGGGTTTAATGGAGCAACCCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAAT
GAAACCCATGAAATTTTAGAAAGAATATCAACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCTCAAATAAAAAGCTGCCAGCTGTGGAGCCTGCTGCATTGGTGAACCA
AGTTGCAGATGAAGCACGTGTCTATTGTGGTGAAGAGCACAACTACGAGTTTTGCCCCAACAATCCAGCTTATGTGTTTTTTGTAGGGCACCAGTCCCAACATAACCTTT
ATTCTAACTTTTATAATCAAGATTGGCACAACCACCCCAACTTCGCGTGGGGAGGGCAAGGAAGTAATGTGCAAGCACAGCAAAATGTGAACCAATCAAGATTTGCTAAA
GCACAGGTATTGCCCCAGCAAAATAAGCAGGTTTTGCCCCAGCAAAATTCAGAGAGTTCTCTTGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGCCTCAATCCA
AAGTAATCAAGCTTCAATGAGAGCCCTGGAGTTGCAAGTGGGTCAACTAGCTAATGTGCTAAAGGCAAGGCCTCAAGGGAAACTTCCTTTAGATACTGAACACCCTAAAA
GGGAAGGTAAGAAGCAGGTACAGGCAGTGACTTTAAGGAGTGGTAAGCCACTAGAAGAGAGAAAATATCCTAGTAAAACTCAAGATGTAGAGAAAAATTGTGATAAAAAT
GTTGTTGTTGAGAAAGAGTTGGAGACTGGTGAATTGCAAGAAGGGTCTGATGCTGCCAGGTCGCGCATGGTGGCAAAAACGAGAGGAAGAAAGGAAAGAGACAATGAGGA
AGAGGAGGTGTCGGTTACACCAGATGCACCAAAGACAAAAGCAAAGAAAAAGAAAACGTTAGAGGAAAAGGAAGCTAAAAGAAGGAAAAGACAACAGAGAGTTGAAGTTG
AAGAAGTAGTTCAAAAGGTAGTGGAAGATATTGCTGTCGAGGTAGTTGAGGAAGACAGTCTGAAGGAACCTAAAGGAAAAAACCCTGAATATACTGACCCGATAGTTGAG
GATACGAAAGAAGTTCAAGAAAAACAGACAGGGGATGCGCAAGAAGAACAGACAATGGTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATAGAACTCTGAAGAAAACTTATTGGTGGCCTGGTATGAAGCGGGAGATAGCTGGATATTTCGATAGATGTTTGATCTGTCAACAGGTTAAACCAGTGAGACAGAG
GCCAGGAGGACTCCTTAATCCACTACCAGTGCCGGAATGGAAGTGGGAGCATATTACCATGGATTTTATGTTTGGATTACCTCGTACTTCTAGTGGACATGATGGTATAT
GGGAGATAACACGGTTTATACCAATTAAAGCGACGTCTACACTAGATCAGCTAGCTAAGCTATACGTCGACAGGATTGTGAGTCAACATGGAGTGCTAGTGTCTATAATT
TCATATAGGGATCCAAGCTACCAGTCTAGTATCGGCATGGTACCATTCGAGGCTTTGTATGGCAGACCATGCAGGACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGAAA
GCTAGTCGGTCCTGAGTTGGTACAAGTTACGTCAGACAATGTTAAGCTGATTAGAGCGAACCTGAAAATAGCTCAGGAACGACAGAAGAGCTATGTAGATAAGCGACGAA
GAGACTTAGAGTTCCAGGTTGGAGATCAGATAGTAGAACGAGTTGGACCAGCAACCTATAGACTTGAGTTGCCAGCAGAACTCGCTCGAATACATGATGTTTTCCATGTG
TCCATGTTGAGGAAATATATTCCAGATCCATCCCATGTGTTGCAAGTGCAACCGATCGAGCTGAAAGAAGACTTGAGTTATAAGGAGGAAGCGGTTCAGATCCTCGACAT
GAAGGAGCAAGTTTTGAGGAACAAAACGATCCCACTCGTGAAAGTTCTTTGGAGACATCATGGAGTAGAGGAGGAAACCGGGGAGTTGAAGAAGATAGGAAAAGCTCATG
CAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAACTAAGAGCACAGGATTTTCGAGCAAAGTAGGG
GGATCTCTGGTTTTCTCTGGTTTTCGAGCATTATGGAGTGTACAAGTTCAATCCGAAGCTCTATTTGGTATGGTAGAGATCGAGCCCTCGGTGCCTGATACACTGCCAAC
GTCTACTGAAAGTTCCAGAGCAAGCTCCAGTACGTGGGTGGAGTTATATATTGAGTCTGTTCATATTGTTATTTTCCAAACCGAGTATGTCAGGACTACACCCCGTGAGG
GTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCGTCTTCCGGACTAAGCTAGCAGTGACTGTGTTAGGGATAGCCAGTTGCCTAGTGCTTGATCGG
GCCAGAGCCATTCGAGCGTATGCTTTTCCAATGTTTGATGAGTTAAATCCAGGAATTGCATGTTCTCAAATTGAGGCAGCAAATTTTGAAATGAAACCGGTAATGTTTCA
GATGCTGCAAACCGTGGGTCAATTCCATGGGTTTAGGCAACTTGAGGATGAAACTTTTAGTGAGGCTTGGGAGAGGTTTAAGGAGCTTTTGCGAAAGTGTCCCCACCATG
GTTTGCCTCATTGTATCCAAATGGAAACGTTCTACAATGGGTTTAATGGAGCAACCCAAGGTATGGTTGATGCTTCGGCTGGAGGGGCCCTTTTGGCAAAAACTTTTAAT
GAAACCCATGAAATTTTAGAAAGAATATCAACTAATAGTTGTCAGTGGTCGGATGTTAGAGGCTCAAATAAAAAGCTGCCAGCTGTGGAGCCTGCTGCATTGGTGAACCA
AGTTGCAGATGAAGCACGTGTCTATTGTGGTGAAGAGCACAACTACGAGTTTTGCCCCAACAATCCAGCTTATGTGTTTTTTGTAGGGCACCAGTCCCAACATAACCTTT
ATTCTAACTTTTATAATCAAGATTGGCACAACCACCCCAACTTCGCGTGGGGAGGGCAAGGAAGTAATGTGCAAGCACAGCAAAATGTGAACCAATCAAGATTTGCTAAA
GCACAGGTATTGCCCCAGCAAAATAAGCAGGTTTTGCCCCAGCAAAATTCAGAGAGTTCTCTTGAGGCAATGATGAAAGAATATATGGCTCGTACAGATGCCTCAATCCA
AAGTAATCAAGCTTCAATGAGAGCCCTGGAGTTGCAAGTGGGTCAACTAGCTAATGTGCTAAAGGCAAGGCCTCAAGGGAAACTTCCTTTAGATACTGAACACCCTAAAA
GGGAAGGTAAGAAGCAGGTACAGGCAGTGACTTTAAGGAGTGGTAAGCCACTAGAAGAGAGAAAATATCCTAGTAAAACTCAAGATGTAGAGAAAAATTGTGATAAAAAT
GTTGTTGTTGAGAAAGAGTTGGAGACTGGTGAATTGCAAGAAGGGTCTGATGCTGCCAGGTCGCGCATGGTGGCAAAAACGAGAGGAAGAAAGGAAAGAGACAATGAGGA
AGAGGAGGTGTCGGTTACACCAGATGCACCAAAGACAAAAGCAAAGAAAAAGAAAACGTTAGAGGAAAAGGAAGCTAAAAGAAGGAAAAGACAACAGAGAGTTGAAGTTG
AAGAAGTAGTTCAAAAGGTAGTGGAAGATATTGCTGTCGAGGTAGTTGAGGAAGACAGTCTGAAGGAACCTAAAGGAAAAAACCCTGAATATACTGACCCGATAGTTGAG
GATACGAAAGAAGTTCAAGAAAAACAGACAGGGGATGCGCAAGAAGAACAGACAATGGTTGTGTAG
Protein sequenceShow/hide protein sequence
MYRTLKKTYWWPGMKREIAGYFDRCLICQQVKPVRQRPGGLLNPLPVPEWKWEHITMDFMFGLPRTSSGHDGIWEITRFIPIKATSTLDQLAKLYVDRIVSQHGVLVSII
SYRDPSYQSSIGMVPFEALYGRPCRTPVCWNEVGERKLVGPELVQVTSDNVKLIRANLKIAQERQKSYVDKRRRDLEFQVGDQIVERVGPATYRLELPAELARIHDVFHV
SMLRKYIPDPSHVLQVQPIELKEDLSYKEEAVQILDMKEQVLRNKTIPLVKVLWRHHGVEEETGELKKIGKAHAKPAIAESEFNLSTSGFLFGLSYTEGTKSTGFSSKVG
GSLVFSGFRALWSVQVQSEALFGMVEIEPSVPDTLPTSTESSRASSSTWVELYIESVHIVIFQTEYVRTTPREGQRVSLEEDDVRWLHAVFRTKLAVTVLGIASCLVLDR
ARAIRAYAFPMFDELNPGIACSQIEAANFEMKPVMFQMLQTVGQFHGFRQLEDETFSEAWERFKELLRKCPHHGLPHCIQMETFYNGFNGATQGMVDASAGGALLAKTFN
ETHEILERISTNSCQWSDVRGSNKKLPAVEPAALVNQVADEARVYCGEEHNYEFCPNNPAYVFFVGHQSQHNLYSNFYNQDWHNHPNFAWGGQGSNVQAQQNVNQSRFAK
AQVLPQQNKQVLPQQNSESSLEAMMKEYMARTDASIQSNQASMRALELQVGQLANVLKARPQGKLPLDTEHPKREGKKQVQAVTLRSGKPLEERKYPSKTQDVEKNCDKN
VVVEKELETGELQEGSDAARSRMVAKTRGRKERDNEEEEVSVTPDAPKTKAKKKKTLEEKEAKRRKRQQRVEVEEVVQKVVEDIAVEVVEEDSLKEPKGKNPEYTDPIVE
DTKEVQEKQTGDAQEEQTMVV