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Lag0010724 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010724
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr1:4659989..4660766
RNA-Seq ExpressionLag0010724
SyntenyLag0010724
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037515.1 uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa]8.3e-3363.78Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ
        K +  RR+D RTLDW TFRGIFEEKYYPTTYCEAKRDEFLELKQG                               FERGLRFEI TP TAIAKWTNFSQ
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ

Query:  LVETALRVEQSIIEEKSVVEPSRGAPT
        LVETALRVEQSI+EEKS +E SRG  T
Subjt:  LVETALRVEQSIIEEKSVVEPSRGAPT

KAA0037547.1 uncharacterized protein E6C27_scaffold277G001660 [Cucumis melo var. makuwa]2.9e-3360.28Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEF+ LKQG                               FERGLRFEI TP TAIAKWTNFSQ
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ

Query:  LVETALRVEQSIIEEKSVVEPSRGAPTVRVFEVVSSEGSHL
        LVETALRVEQSI EEKS VE SRG  T+   E VSS GS L
Subjt:  LVETALRVEQSIIEEKSVVEPSRGAPTVRVFEVVSSEGSHL

KAA0060440.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-3273.08Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELK----QGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPT
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  +    + FERGLRFEI TP TAIAKWTNFSQLVETALRVEQSI EEKS VE SRG  T
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELK----QGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPT

Query:  VRVF
           F
Subjt:  VRVF

KAA0061420.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-3275Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  ++ FERGLRFEI TP T IAKWTNFSQLVETALRVEQSI EEKS VE SRG  T   F
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF

TYK28679.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.1e-3275Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  ++ FERGLRFEI TP T IAKWTNFSQLVETALRVEQSI EEKS VE SRG  T   F
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF

TrEMBL top hitse value%identityAlignment
A0A5A7T7M1 Retrotrans_gag domain-containing protein1.4e-3360.28Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEF+ LKQG                               FERGLRFEI TP TAIAKWTNFSQ
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ

Query:  LVETALRVEQSIIEEKSVVEPSRGAPTVRVFEVVSSEGSHL
        LVETALRVEQSI EEKS VE SRG  T+   E VSS GS L
Subjt:  LVETALRVEQSIIEEKSVVEPSRGAPTVRVFEVVSSEGSHL

A0A5A7UZA9 Retrotransposon protein4.5e-3273.08Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELK----QGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPT
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  +    + FERGLRFEI TP TAIAKWTNFSQLVETALRVEQSI EEKS VE SRG  T
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELK----QGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPT

Query:  VRVF
           F
Subjt:  VRVF

A0A5A7V2C6 Reverse transcriptase3.4e-3275Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  ++ FERGLRFEI TP T IAKWTNFSQLVETALRVEQSI EEKS VE SRG  T   F
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF

A0A5D3BSA6 Retrotrans_gag domain-containing protein4.0e-3363.78Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ
        K +  RR+D RTLDW TFRGIFEEKYYPTTYCEAKRDEFLELKQG                               FERGLRFEI TP TAIAKWTNFSQ
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQG-------------------------------FERGLRFEICTPATAIAKWTNFSQ

Query:  LVETALRVEQSIIEEKSVVEPSRGAPT
        LVETALRVEQSI+EEKS +E SRG  T
Subjt:  LVETALRVEQSIIEEKSVVEPSRGAPT

A0A5D3DZ50 DNA/RNA polymerases superfamily protein3.4e-3275Show/hide
Query:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF
        K +  RRSD R LDW TFRGIFE+KYYP+TYCEAKRDEFL  ++ FERGLRFEI TP T IAKWTNFSQLVETALRVEQSI EEKS VE SRG  T   F
Subjt:  KKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGTCCTAAGAAGAAAGTTCACTTTAGGCGCAGTGATACACGTACGTTAGATTGGCTAACATTCAGAGGCATATTCGAGGAAAAGTACTATCCCACCACATATTG
TGAGGCAAAGAGAGATGAGTTTCTGGAGCTGAAACAAGGGTTTGAGAGAGGATTGCGTTTTGAGATATGTACCCCAGCTACCGCTATTGCTAAGTGGACGAATTTTTCCC
AGCTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCTGTGGTGGAGCCTAGTCGTGGAGCTCCAACAGTTAGGGTTTTTGAGGTCGTGAGCAGC
GAAGGTTCACACCTGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGTCCTAAGAAGAAAGTTCACTTTAGGCGCAGTGATACACGTACGTTAGATTGGCTAACATTCAGAGGCATATTCGAGGAAAAGTACTATCCCACCACATATTG
TGAGGCAAAGAGAGATGAGTTTCTGGAGCTGAAACAAGGGTTTGAGAGAGGATTGCGTTTTGAGATATGTACCCCAGCTACCGCTATTGCTAAGTGGACGAATTTTTCCC
AGCTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTATAGAGGAAAAGTCTGTGGTGGAGCCTAGTCGTGGAGCTCCAACAGTTAGGGTTTTTGAGGTCGTGAGCAGC
GAAGGTTCACACCTGGAGTGA
Protein sequenceShow/hide protein sequence
MGCPKKKVHFRRSDTRTLDWLTFRGIFEEKYYPTTYCEAKRDEFLELKQGFERGLRFEICTPATAIAKWTNFSQLVETALRVEQSIIEEKSVVEPSRGAPTVRVFEVVSS
EGSHLE