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Lag0010744 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010744
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:5119317..5119919
RNA-Seq ExpressionLag0010744
SyntenyLag0010744
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.3e-3850Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED+AN  I   +FKD+LYDYY  ETVKD KE EFLHL QG +S+ QYERKFT L  F   L+     KIKRF+KGL   IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQ-RSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  P ++ + ++G LIMDK+V+ K        SSSGVKR+  PT A    +AP  Q Q R  P  P+C T ++R + QCWTG K  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQ-RSTPALPLCTTSKRRDSEQCWTGKKVYFNC

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]5.1e-4651.31Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+D+A  WW S++A ED+AN P++  +FKD+LYDYY PETVKD KE EFLHL QG +++ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNCEK
         L  P T+ + ++G LIMDK+V+ +VQP     SSSGVKR+  P  A QP +AP Q+P +     P+C + ++R++ QCWTG    F C +
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNCEK

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]1.2e-4251.85Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED AN PI   +FK++LYDYY PETVKD KE EFLHL QG +S+ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  PTT+ + ++G L+MDK+V+ K  P     SSSGVKR+ P T A    +AP +Q Q      P+C T ++R + QCWTG K  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC

XP_022156546.1 uncharacterized protein LOC111023424 [Momordica charantia]2.8e-3651.88Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED+AN P+   +FK++LYD+Y  ETV+D KE EFLHL QG +++ QYERKFT L  F   L+ T   KIKRF+KGL   IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQR
         L  P T+ + ++GTLIMDK+V+ +VQP     SS GVKR+ PPT A QP +AP +  Q+
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQR

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]1.5e-4249.21Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++  ED+AN PI+  +FKD+LYDYY P+T+KD KE EFLH + G +++ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  P T+ + ++GTLIMD +V+  VQP     SSSGVKR+  P  A QP +AP Q+P +     P+C + ++R + QCWTG +  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221446.5e-3950Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED+AN  I   +FKD+LYDYY  ETVKD KE EFLHL QG +S+ QYERKFT L  F   L+     KIKRF+KGL   IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQ-RSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  P ++ + ++G LIMDK+V+ K        SSSGVKR+  PT A    +AP  Q Q R  P  P+C T ++R + QCWTG K  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQ-RSTPALPLCTTSKRRDSEQCWTGKKVYFNC

A0A6J1DQJ4 uncharacterized protein LOC1110228852.5e-4651.31Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+D+A  WW S++A ED+AN P++  +FKD+LYDYY PETVKD KE EFLHL QG +++ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNCEK
         L  P T+ + ++G LIMDK+V+ +VQP     SSSGVKR+  P  A QP +AP Q+P +     P+C + ++R++ QCWTG    F C +
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNCEK

A0A6J1DUM2 uncharacterized protein LOC1110232475.7e-4351.85Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED AN PI   +FK++LYDYY PETVKD KE EFLHL QG +S+ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  PTT+ + ++G L+MDK+V+ K  P     SSSGVKR+ P T A    +AP +Q Q      P+C T ++R + QCWTG K  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC

A0A6J1DVA0 uncharacterized protein LOC1110234241.4e-3651.88Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++A ED+AN P+   +FK++LYD+Y  ETV+D KE EFLHL QG +++ QYERKFT L  F   L+ T   KIKRF+KGL   IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQR
         L  P T+ + ++GTLIMDK+V+ +VQP     SS GVKR+ PPT A QP +AP +  Q+
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQR

A0A6J1DYU5 uncharacterized protein LOC1110255177.4e-4349.21Show/hide
Query:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV
        ML+ +A  WW S++  ED+AN PI+  +FKD+LYDYY P+T+KD KE EFLH + G +++ QYERKFT L  F   L+ T   KIKRF+KGLR  IRG V
Subjt:  MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFV

Query:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC
         L  P T+ + ++GTLIMD +V+  VQP     SSSGVKR+  P  A QP +AP Q+P +     P+C + ++R + QCWTG +  F C
Subjt:  ALNGPTTFVDTLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAAGACAAAGCTCAAATGTGGTGGAAGTCAATGTCAGCAGTCGAAGACAACGCCAACCAACCAATCTCATTGGAGAAGTTCAAAGACGTGCTTTATGATTATTA
TTCCCCTGAGACGGTTAAGGATGACAAGGAAACTGAATTCCTGCACTTGACCCAAGGGAATATGTCCATAGTGCAGTACGAGAGGAAGTTCACCGCACTATTGCACTTTA
CCCCTAACCTGGTCAGCACACCAAAACGGAAAATCAAGAGGTTCATTAAGGGCCTCCGTGATGAGATTCGCGGTTTCGTAGCCCTAAACGGACCCACTACTTTTGTCGAC
ACGCTCAAAGGCACATTAATCATGGATAAAAATGTGGCAAAAAAGGTACAGCCCCAATGGGGAGAAGCTTCATCGTCGGGAGTCAAGAGAGAGCCTCCTCCTACGCTTGC
ACGACAGCCGTCCAAGGCCCCTTGTCAACAGCCGCAGAGGTCGACTCCTGCCCTCCCTCTGTGCACTACATCTAAAAGGCGCGATTCTGAACAATGTTGGACAGGCAAGA
AGGTCTATTTCAATTGTGAAAAAAGGACACTATGCAAGCCAGTGTACGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAAAGACAAAGCTCAAATGTGGTGGAAGTCAATGTCAGCAGTCGAAGACAACGCCAACCAACCAATCTCATTGGAGAAGTTCAAAGACGTGCTTTATGATTATTA
TTCCCCTGAGACGGTTAAGGATGACAAGGAAACTGAATTCCTGCACTTGACCCAAGGGAATATGTCCATAGTGCAGTACGAGAGGAAGTTCACCGCACTATTGCACTTTA
CCCCTAACCTGGTCAGCACACCAAAACGGAAAATCAAGAGGTTCATTAAGGGCCTCCGTGATGAGATTCGCGGTTTCGTAGCCCTAAACGGACCCACTACTTTTGTCGAC
ACGCTCAAAGGCACATTAATCATGGATAAAAATGTGGCAAAAAAGGTACAGCCCCAATGGGGAGAAGCTTCATCGTCGGGAGTCAAGAGAGAGCCTCCTCCTACGCTTGC
ACGACAGCCGTCCAAGGCCCCTTGTCAACAGCCGCAGAGGTCGACTCCTGCCCTCCCTCTGTGCACTACATCTAAAAGGCGCGATTCTGAACAATGTTGGACAGGCAAGA
AGGTCTATTTCAATTGTGAAAAAAGGACACTATGCAAGCCAGTGTACGACTAA
Protein sequenceShow/hide protein sequence
MLKDKAQMWWKSMSAVEDNANQPISLEKFKDVLYDYYSPETVKDDKETEFLHLTQGNMSIVQYERKFTALLHFTPNLVSTPKRKIKRFIKGLRDEIRGFVALNGPTTFVD
TLKGTLIMDKNVAKKVQPQWGEASSSGVKREPPPTLARQPSKAPCQQPQRSTPALPLCTTSKRRDSEQCWTGKKVYFNCEKRTLCKPVYD