CuGenDBv2

Gene ID	Lag0010756
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr1:5369772..5373216
RNA-Seq Expression	Lag0010756
Synteny	Lag0010756
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN83798.1 hypothetical protein VITISV_039072 [Vitis vinifera]

6.5e-50

35.84

Show/hide

Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        F+D    +P ++LD    Q NP+F+ W+R                 +G+IV  +TA +IW S+   Y+S + A ++ L +Q+Q IKK  + +S+YLS++K
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNRSHTTLTCHHKTNLAYQTP--PPQALLTPTTTPQPS
         + D F  I EP+SY D L                                               H  L  +H+TNL Y  P  P  A   P    Q S
Subjt:  DIGDKFPAIEEPISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNRSHTTLTCHHKTNLAYQTP--PPQALLTPTTTPQPS

Query:  SDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDR
        S +++  +         S   D SW++D GA HH TP+   ++++  Y  G+H  VG+ K I ISHIG H+  + S K + L+ VLHT  ISK+LISV R
Subjt:  SDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDR

Query:  LCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAAPN-----WHFRLGHPA
        L  DN+AFV+FY TFFLVKD +TKQLLL+G LE GLY+L+   ++  SSVSS+  ++ F       F +       WH RLGHPA
Subjt:  LCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAAPN-----WHFRLGHPA

GFZ12741.1 UBX domain-containing protein [Actinidia rufa]

8.8e-47

32.91

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Query:  SSSTSSDSLTPPVPNPSTPN---TTLVVTPNAQQAK-SPI--QPPV-QPTLSQNQPH------------------PSFLDGSVPAPSQFLDDQNTQPNPD
        +SST+  S TPP P P T N   ++ +  PN Q    SP+   P + QP   +   H                    FLDGS   P +FLD Q  Q NP+
Subjt:  SSSTSSDSLTPPVPNPSTPN---TTLVVTPNAQQAK-SPI--QPPV-QPTLSQNQPH------------------PSFLDGSVPAPSQFLDDQNTQPNPD

Query:  FLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDHLAHIL
        F +W+R                 +G+IV   +AS+IW++++R Y + + A +  L+T +Q IKK+GLT   Y+ + + + +   +I EP++Y DHL + L
Subjt:  FLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDHLAHIL

Query:  A--LEDVRSLFLAYEAQLEKQNFVEQLNLAQ-------ANLSSLQLHHNNR--------------------------------SHTTLTCHHKTNLAYQT
             D      + ++Q  + +  E  +           N S+    ++N                                  HT   C+H TNL YQ 
Subjt:  A--LEDVRSLFLAYEAQLEKQNFVEQLNLAQ-------ANLSSLQLHHNNR--------------------------------SHTTLTCHHKTNLAYQT

Query:  PPP-----QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVL
        PPP      A +TP  +   SS+  +        PD SW++D GA HH TPD   L +++PY G + VTVG+GK   IS+IG H+     +  + LH V 
Subjt:  PPP-----QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVL

Query:  HTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRL-SHHPSMSSVSSTLR
        H+ +++K L+SV RLC DN AF++FY TFFLVK   TKQLLL+G L+ GLYR+ S  PS  S+ S ++
Subjt:  HTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRL-SHHPSMSSVSSTLR

RVW59875.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.1e-41

30.19

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Query:  QPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDH
        + NPDF+ W R                 MG+IV   ++   W +++R + + + AR++ L+ + Q  +K  LT+ +Y+ ++K + D   AI EP++  D 
Subjt:  QPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDH

Query:  LAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHH--NNRS-----------------------------
        +  +L                     +L  V S+ L +E +L  QN V + N+  ANL++ Q  H  N RS                             
Subjt:  LAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHH--NNRS-----------------------------

Query:  -------HTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIG
               HT + C+H+ ++ +Q   P      T  P   + V +  +  S   DE+WF D GA HH++     LS+  PY+G + V VG+GK + I H G
Subjt:  -------HTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIG

Query:  SHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLRSKDFATVFLSTFAAP
        + +F   S KT  L  VLH   I+  LISV + C DN  F +F+  FF VKD  TK++LL+G+LE GLYR       S  +    S D ++    T    
Subjt:  SHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLRSKDFATVFLSTFAAP

Query:  NWHFRLGHPAAATLWQILSYLHVS
         WH RLGHPA   L  IL+  ++S
Subjt:  NWHFRLGHPAAATLWQILSYLHVS

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

1.1e-57

36.49

Show/hide

Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        F+D    +P ++LD    Q NP+F+ W+R                 +G+IV  +TA +IW S+   Y+S + A ++ L +Q+Q IKK  + +S+YLS++K
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNN----------RSHTT
         + D+F  I EP+SY D L  IL                     +L++V SL   YE +L +++  + LN  QAN    Q  +NN            H  
Subjt:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNN----------RSHTT

Query:  LTCHHKTNLAYQTP--PPQALLTPTTTPQPSSDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGS
        L  +H+TNL Y  P  P  A   P    Q SS +++  +         S   D SW++D GA HH TP+   ++++  Y  G+H  VG+ K I ISHIG 
Subjt:  LTCHHKTNLAYQTP--PPQALLTPTTTPQPSSDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGS

Query:  HSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAA
        H+  + S K + L+ VLHT  ISK+LISV RL  DN+AFV+FY TFFLVKD +TKQLLL+G LE GLY+L+   ++  SSVSS+  ++ F       F +
Subjt:  HSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAA

Query:  PN-----WHFRLGHPAAATLWQILSYLHVSCSS
               WH RLGHPA   + Q+L   ++  S+
Subjt:  PN-----WHFRLGHPAAATLWQILSYLHVSCSS

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]

1.7e-58

42.12

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Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        +LDG++  P QFLD    QPNP +  WER                KMGE+VSL T  +IW S+ R YDSKTTARI+GLKT++Q ++KDG +VSQYL++IK
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNR--------------
        +I DKF A+ EP+SY DHLAH+L                     +LEDVRSL LAYEA+L+KQN V+QLN+AQANL +L L HN++              
Subjt:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNR--------------

Query:  ------------------------------------------SHTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGAR
                                                   H+   C+H+TN+AY    PQAL       QPS    S+  H+  HPDESWF+D GA 
Subjt:  ------------------------------------------SHTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGAR

Query:  HHITPDGAFLSNSTPYLGGEHVTVGDGKPI
        HH+TPD + L N TPY GGE VTVG+G  +
Subjt:  HHITPDGAFLSNSTPYLGGEHVTVGDGKPI

TrEMBL top hits

e value

%identity

Alignment

A0A438FIP9 Retrovirus-related Pol polyprotein from transposon RE1

5.4e-42

30.19

Show/hide

Query:  QPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDH
        + NPDF+ W R                 MG+IV   ++   W +++R + + + AR++ L+ + Q  +K  LT+ +Y+ ++K + D   AI EP++  D 
Subjt:  QPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDH

Query:  LAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHH--NNRS-----------------------------
        +  +L                     +L  V S+ L +E +L  QN V + N+  ANL++ Q  H  N RS                             
Subjt:  LAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHH--NNRS-----------------------------

Query:  -------HTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIG
               HT + C+H+ ++ +Q   P      T  P   + V +  +  S   DE+WF D GA HH++     LS+  PY+G + V VG+GK + I H G
Subjt:  -------HTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIG

Query:  SHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLRSKDFATVFLSTFAAP
        + +F   S KT  L  VLH   I+  LISV + C DN  F +F+  FF VKD  TK++LL+G+LE GLYR       S  +    S D ++    T    
Subjt:  SHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLRSKDFATVFLSTFAAP

Query:  NWHFRLGHPAAATLWQILSYLHVS
         WH RLGHPA   L  IL+  ++S
Subjt:  NWHFRLGHPAAATLWQILSYLHVS

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1

5.4e-58

36.49

Show/hide

Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        F+D    +P ++LD    Q NP+F+ W+R                 +G+IV  +TA +IW S+   Y+S + A ++ L +Q+Q IKK  + +S+YLS++K
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNN----------RSHTT
         + D+F  I EP+SY D L  IL                     +L++V SL   YE +L +++  + LN  QAN    Q  +NN            H  
Subjt:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNN----------RSHTT

Query:  LTCHHKTNLAYQTP--PPQALLTPTTTPQPSSDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGS
        L  +H+TNL Y  P  P  A   P    Q SS +++  +         S   D SW++D GA HH TP+   ++++  Y  G+H  VG+ K I ISHIG 
Subjt:  LTCHHKTNLAYQTP--PPQALLTPTTTPQPSSDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGS

Query:  HSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAA
        H+  + S K + L+ VLHT  ISK+LISV RL  DN+AFV+FY TFFLVKD +TKQLLL+G LE GLY+L+   ++  SSVSS+  ++ F       F +
Subjt:  HSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAA

Query:  PN-----WHFRLGHPAAATLWQILSYLHVSCSS
               WH RLGHPA   + Q+L   ++  S+
Subjt:  PN-----WHFRLGHPAAATLWQILSYLHVSCSS

A0A6J1DQX7 uncharacterized protein LOC111022315

8.3e-59

42.12

Show/hide

Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        +LDG++  P QFLD    QPNP +  WER                KMGE+VSL T  +IW S+ R YDSKTTARI+GLKT++Q ++KDG +VSQYL++IK
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNR--------------
        +I DKF A+ EP+SY DHLAH+L                     +LEDVRSL LAYEA+L+KQN V+QLN+AQANL +L L HN++              
Subjt:  DIGDKFPAIEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNR--------------

Query:  ------------------------------------------SHTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGAR
                                                   H+   C+H+TN+AY    PQAL       QPS    S+  H+  HPDESWF+D GA 
Subjt:  ------------------------------------------SHTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGAR

Query:  HHITPDGAFLSNSTPYLGGEHVTVGDGKPI
        HH+TPD + L N TPY GGE VTVG+G  +
Subjt:  HHITPDGAFLSNSTPYLGGEHVTVGDGKPI

A0A7J0GPN0 UBX domain-containing protein

4.3e-47

32.91

Show/hide

Query:  SSSTSSDSLTPPVPNPSTPN---TTLVVTPNAQQAK-SPI--QPPV-QPTLSQNQPH------------------PSFLDGSVPAPSQFLDDQNTQPNPD
        +SST+  S TPP P P T N   ++ +  PN Q    SP+   P + QP   +   H                    FLDGS   P +FLD Q  Q NP+
Subjt:  SSSTSSDSLTPPVPNPSTPN---TTLVVTPNAQQAK-SPI--QPPV-QPTLSQNQPH------------------PSFLDGSVPAPSQFLDDQNTQPNPD

Query:  FLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDHLAHIL
        F +W+R                 +G+IV   +AS+IW++++R Y + + A +  L+T +Q IKK+GLT   Y+ + + + +   +I EP++Y DHL + L
Subjt:  FLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDHLAHIL

Query:  A--LEDVRSLFLAYEAQLEKQNFVEQLNLAQ-------ANLSSLQLHHNNR--------------------------------SHTTLTCHHKTNLAYQT
             D      + ++Q  + +  E  +           N S+    ++N                                  HT   C+H TNL YQ 
Subjt:  A--LEDVRSLFLAYEAQLEKQNFVEQLNLAQ-------ANLSSLQLHHNNR--------------------------------SHTTLTCHHKTNLAYQT

Query:  PPP-----QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVL
        PPP      A +TP  +   SS+  +        PD SW++D GA HH TPD   L +++PY G + VTVG+GK   IS+IG H+     +  + LH V 
Subjt:  PPP-----QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVL

Query:  HTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRL-SHHPSMSSVSSTLR
        H+ +++K L+SV RLC DN AF++FY TFFLVK   TKQLLL+G L+ GLYR+ S  PS  S+ S ++
Subjt:  HTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRL-SHHPSMSSVSSTLR

A5C0U6 Reverse transcriptase Ty1/copia-type domain-containing protein

3.2e-50

35.84

Show/hide

Query:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK
        F+D    +P ++LD    Q NP+F+ W+R                 +G+IV  +TA +IW S+   Y+S + A ++ L +Q+Q IKK  + +S+YLS++K
Subjt:  FLDGSVPAPSQFLDDQNTQPNPDFLTWER----------------KMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIK

Query:  DIGDKFPAIEEPISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNRSHTTLTCHHKTNLAYQTP--PPQALLTPTTTPQPS
         + D F  I EP+SY D L                                               H  L  +H+TNL Y  P  P  A   P    Q S
Subjt:  DIGDKFPAIEEPISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNRSHTTLTCHHKTNLAYQTP--PPQALLTPTTTPQPS

Query:  SDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDR
        S +++  +         S   D SW++D GA HH TP+   ++++  Y  G+H  VG+ K I ISHIG H+  + S K + L+ VLHT  ISK+LISV R
Subjt:  SDVASTFSH-------DSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDR

Query:  LCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAAPN-----WHFRLGHPA
        L  DN+AFV+FY TFFLVKD +TKQLLL+G LE GLY+L+   ++  SSVSS+  ++ F       F +       WH RLGHPA
Subjt:  LCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSM--SSVSSTLRSKDFATVFLSTFAAPN-----WHFRLGHPA

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.9e-24

27.09

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Query:  PSQFLDDQNTQPNPDFLTWERKMGEIVS----------------LNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPA
        P+    D   + NPD+  W+R+   I S                  TA++IW+++++ Y + +   +  L+TQ++   K   T+  Y+  +    D+   
Subjt:  PSQFLDDQNTQPNPDFLTWERKMGEIVS----------------LNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPA

Query:  IEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQL----------EKQNFVEQLNLAQAN-----------------------
        + +P+ + + +  +L                      L ++    L +E+++             N V   N    N                       
Subjt:  IEEPISYMDHLAHIL---------------------ALEDVRSLFLAYEAQL----------EKQNFVEQLNLAQAN-----------------------

Query:  -LSSLQLHHNN---------------RSHTTLTC----HHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLS
          SS   H NN               + H+   C    H  +++  Q PP     +P T  QP +++A      S +   +W LD GA HHIT D   LS
Subjt:  -LSSLQLHHNN---------------RSHTTLTC----HHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLS

Query:  NSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHP
           PY GG+ V V DG  I ISH GS S    S + + LH +L+   I K LISV RLC  N   V+F+   F VKDL T   LL+G  +D LY     P
Subjt:  NSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHP

Query:  SMSSVSSTLRSKDFATVFLSTFAAPNWHFRLGHPAAATLWQILSYLHVSCSSLN
          SS   +L    FA+   S     +WH RLGHPA + L  ++S  + S S LN
Subjt:  SMSSVSSTLRSKDFATVFLSTFAAPNWHFRLGHPAAATLWQILSYLHVSCSSLN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.1e-22

27.66

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Query:  FLDGSVPAPSQFL-DDQNTQPNPDFLTWERKMGEIVS----------------LNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKK-DGLTVSQYLSQ
        FLDGS P P   +  D   + NPD+  W R+   I S                  TA++IW+++++ Y + +   +    TQ++ I + D L +   L +
Subjt:  FLDGSVPAPSQFL-DDQNTQPNPDFLTWERKMGEIVS----------------LNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKK-DGLTVSQYLSQ

Query:  IKDIGDKFPAIEE--PISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQ-----ANLSSLQ-----------------LHHNNRSHTTLTCHH
          D  ++   + E  P  Y   +  I A +   SL   +E  + +++ +  LN A+     AN+ + +                  ++NNRS++      
Subjt:  IKDIGDKFPAIEE--PISYMDHLAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQ-----ANLSSLQ-----------------LHHNNRSHTTLTCHH

Query:  KTNLAYQTPPP------------------------------QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEH
         +    + P P                              Q   +P T  QP +++A    +++     +W LD GA HHIT D   LS   PY GG+ 
Subjt:  KTNLAYQTPPP------------------------------QALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITPDGAFLSNSTPYLGGEH

Query:  VTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLR
        V + DG  I I+H GS S    S +++ L+ VL+   I K LISV RLC  N+  V+F+   F VKDL T   LL+G  +D LY     P  SS +    
Subjt:  VTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSSVSSTLR

Query:  SKDFATVFLSTFAAP-------NWHFRLGHPAAATLWQILS
                +S FA+P       +WH RLGHP+ A L  ++S
Subjt:  SKDFATVFLSTFAAP-------NWHFRLGHPAAATLWQILS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACCGTCGTTGCTACTGCGTCGTCGTCGAAGCTGTTCGTCGGAGGGGATGGGACACACACGGCTGGGAGAAAGAGATGAGAACATTCTCTTCTCTTCTACCGAATAT
TAGGAACATTTTCTTCTCCACTGTTTTCTTCATTCTTGATGGTATCAGAGCTTTGCGACTTTACTCAATGATGGCGTCTGAAGCTTCTTCTTCTTCTACATCATCTGATT
CTCTTACTCCACCTGTTCCCAATCCTTCTACCCCGAATACTACCCTTGTTGTGACTCCAAATGCACAACAAGCCAAATCCCCAATTCAGCCTCCTGTTCAACCAACTCTC
TCGCAAAACCAACCTCACCCAAGTTTTCTTGATGGTTCTGTTCCTGCCCCTTCTCAGTTTCTTGATGATCAGAATACTCAACCAAATCCGGACTTTCTCACTTGGGAAAG
AAAAATGGGTGAAATAGTAAGTTTAAACACTGCCTCTGAAATTTGGGATTCTATAAAGCGTGCTTATGATTCTAAGACTACTGCTAGGATACTGGGCCTTAAAACTCAGA
TTCAATGTATTAAGAAAGATGGTCTTACTGTGAGTCAATATCTTTCACAAATTAAGGATATAGGTGATAAATTTCCTGCCATTGAAGAACCTATTTCTTATATGGATCAC
TTAGCTCATATTCTAGCTTTGGAGGATGTTCGTAGTTTGTTTTTGGCCTATGAAGCTCAGTTGGAGAAACAAAATTTTGTGGAACAACTTAACTTGGCTCAAGCCAATCT
TAGTAGCCTTCAACTTCACCATAACAATCGCAGTCATACGACTCTCACTTGTCATCATAAAACAAATTTAGCCTATCAAACTCCCCCTCCTCAAGCCTTGTTAACCCCAA
CCACGACCCCACAACCATCTTCCGATGTTGCTTCCACCTTTTCTCATGATTCCTATCATCCTGATGAAAGCTGGTTTCTTGATTTCGGAGCTAGACATCACATTACTCCG
GATGGTGCTTTTTTGTCCAATTCTACACCTTATCTTGGTGGTGAGCATGTCACAGTTGGTGATGGTAAGCCTATTACTATATCTCATATTGGTTCTCATTCTTTCAAGTA
TTTATCTCATAAGACTGTGTTTCTTCATTTTGTACTTCATACCTCTGCTATTTCTAAAAGATTAATTAGTGTCGATCGCTTGTGTCGAGATAACCAAGCTTTTGTTAAAT
TTTACTCTACTTTTTTTCTTGTTAAGGATCTACGAACCAAGCAACTTCTTCTCAAGGGCACTCTTGAAGATGGGCTCTATCGCTTATCTCATCATCCTTCCATGTCCTCA
GTGTCTTCGACTTTAAGATCTAAAGATTTTGCTACTGTTTTTTTGTCTACTTTTGCTGCCCCTAACTGGCACTTCCGTTTGGGTCATCCGGCTGCTGCCACCTTATGGCA
AATTTTGTCTTATCTTCATGTTTCATGCTCTAGTCTTAATACTTTTGTAATTCTCATGTCAAATGGCTAA

mRNA sequence

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Protein sequence

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MNRRCYCVVVEAVRRRGWDTHGWEKEMRTFSSLLPNIRNIFFSTVFFILDGIRALRLYSMMASEASSSSTSSDSLTPPVPNPSTPNTTLVVTPNAQQAKSPIQPPVQPTL
SQNQPHPSFLDGSVPAPSQFLDDQNTQPNPDFLTWERKMGEIVSLNTASEIWDSIKRAYDSKTTARILGLKTQIQCIKKDGLTVSQYLSQIKDIGDKFPAIEEPISYMDH
LAHILALEDVRSLFLAYEAQLEKQNFVEQLNLAQANLSSLQLHHNNRSHTTLTCHHKTNLAYQTPPPQALLTPTTTPQPSSDVASTFSHDSYHPDESWFLDFGARHHITP
DGAFLSNSTPYLGGEHVTVGDGKPITISHIGSHSFKYLSHKTVFLHFVLHTSAISKRLISVDRLCRDNQAFVKFYSTFFLVKDLRTKQLLLKGTLEDGLYRLSHHPSMSS
VSSTLRSKDFATVFLSTFAAPNWHFRLGHPAAATLWQILSYLHVSCSSLNTFVILMSNG

Lag0010756 (gene) of Sponge gourd (AG-4) v1 genome