; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010771 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010771
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:6045405..6047753
RNA-Seq ExpressionLag0010771
SyntenyLag0010771
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.4e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC MST TR SAF+RLS+S SKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K++S VPS +KRK SI I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-1961.46Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein6.9e-2062.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

A0A5A7TQ06 Retrotransposon gag protein1.2e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

A0A5A7U974 Retrotransposon gag protein3.4e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC MST TR SAF+RLS+S SKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K++S VPS +KRK SI I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

A0A5D3BBF9 Gag protease polyprotein1.2e-1962.5Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

A0A5D3D209 Retrotransposon gag protein3.4e-1961.46Show/hide
Query:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV
        +SM   EEENQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T++Q KR+M + + K F E N D K+HS VPS MKRK S+ I TEGSL V
Subjt:  MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCATGTATGAAGAGGAAATTCTCTATTCTCATAACTACAGAAGGTTCCTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAA
GGTTCTGACGCTGCGCTGCTACCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCAAAAGGTTCTCACGCATTCGGCTACAGTTC
ATTTCCTCCAAATTTGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTGTTCTCATGCGCGCCGCTGCAGTTCCTTCTCTCCAAACTCGAA
GGTGTTCTCACGCGCGCCGCCGCAGTTCATTCTCTCCAAGTTTGAAGGTTCTCTCAAGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGT
TGCAGTTCCTTCTCTCCAAATTCAAAAGGTTCTCACGCATTCGGCTACAGTTCATTTCCTCCAAATTTGAAGGTGTTCTCACGCGCGCCACTGCAGTTCCTTCTCTCCAA
GTTTGAAGGTGTTCTCGCGCGCTTTGTTGCCGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCGTGCGCTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGA
CGCTCCGCTGCAGTTCCTTCTTTCTCCAAATTCGAAGGTTCTCACGTGCTCCGCTGCAGTTCCTTCGCTTTCGCTGCAATTCCTTCTCTCCGAGTTCGAAGGTTCTCACG
ACGTTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGACGCTCCGCTGTAGTTCCTTCTCTCCAAATTTGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCT
TCTCTCCAAGTTCGAAGGTGTTCTCGTGCGCTTCGCTGCAGTTCCTTCCTCCAAAATTCGAAGGTTCTCTCACGCGCTTCGTTACAGTTCCTTCTCTCCAAGTATGAAGG
TTCTCTCCTCCAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAAGG
TTCTCTCCTCCAAGTCTGAAGGTGCTCACGTGCTTCGGTAAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAAGT
TTCAAAGGCCCTCACGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGTTTCGCTGCTACCTTCCTTCAAGTTCGAAGGTTCTCTCACGCGC
TGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTG
AGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGT
CCGCTTCGCTTCATCTTCAAAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAGCTTCATA
GTAGCGTCCCGTCATGTATGAAGAGGAAATTCTCTATTCTCATAACTACAGAAGGTTCCTTGAAGGTTCCCACATTGCGCTGTTGTGCTGCTTCCTTCTCCAAGTTCGAA
GGTTCTGACGCTGCGCTGCTACCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGTTGCAGTTCCTTCTCTCCAAGTTCAAAAGGTTCTCACGCATTCGGCTACAGTTC
ATTTCCTCCAAATTTGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTGTTCTCATGCGCGCCGCTGCAGTTCCTTCTCTCCAAACTCGAA
GGTGTTCTCACGCGCGCCGCCGCAGTTCATTCTCTCCAAGTTTGAAGGTTCTCTCAAGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCATGCGCTTTGT
TGCAGTTCCTTCTCTCCAAATTCAAAAGGTTCTCACGCATTCGGCTACAGTTCATTTCCTCCAAATTTGAAGGTGTTCTCACGCGCGCCACTGCAGTTCCTTCTCTCCAA
GTTTGAAGGTGTTCTCGCGCGCTTTGTTGCCGTTCCTTCCTCCCAAATTCGAAGGTTCTCTCGTGCGCTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGA
CGCTCCGCTGCAGTTCCTTCTTTCTCCAAATTCGAAGGTTCTCACGTGCTCCGCTGCAGTTCCTTCGCTTTCGCTGCAATTCCTTCTCTCCGAGTTCGAAGGTTCTCACG
ACGTTTCGTTGCAGTTCCTTCCTCCCAAATTTGAAGGTTCTCACGACGCTCCGCTGTAGTTCCTTCTCTCCAAATTTGAAGGTGTTCTCACGCGCGCCGCTGCAGTTCCT
TCTCTCCAAGTTCGAAGGTGTTCTCGTGCGCTTCGCTGCAGTTCCTTCCTCCAAAATTCGAAGGTTCTCTCACGCGCTTCGTTACAGTTCCTTCTCTCCAAGTATGAAGG
TTCTCTCCTCCAAGTCGAAGGTTCTCACGTTGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGTCGTAGTTCCTTCTCTCCAAGTACGAAGG
TTCTCTCCTCCAAGTCTGAAGGTGCTCACGTGCTTCGGTAAAGTTCCTTCCTCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAATTCGAAAGT
TTCAAAGGCCCTCACGCGCTGCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGTTTCGCTGCTACCTTCCTTCAAGTTCGAAGGTTCTCTCACGCGC
TGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTG
AGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGGCCTCGTTCCACTCCATCTTCAAATGTTGGCAGTTGACGGCGT
CCGCTTCGCTTCATCTTCAAAAAATTGA
Protein sequenceShow/hide protein sequence
MSMVATEEENQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSCMKRKFSILITTEGSLKVPTLRCCAASFSKFE
GSDAALLPSSKFEGFHALCCSSFSPSSKGSHAFGYSSFPPNLKVFSRAPLQFLLSKFEGVLMRAAAVPSLQTRRCSHARRRSSFSPSLKVLSSCFAAVPSSKFEGFHALC
CSSFSPNSKGSHAFGYSSFPPNLKVFSRAPLQFLLSKFEGVLARFVAVPSSQIRRFSRALRCSSFLPNLKVLTTLRCSSFFLQIRRFSRAPLQFLRFRCNSFSPSSKVLT
TFRCSSFLPNLKVLTTLRCSSFSPNLKVFSRAPLQFLLSKFEGVLVRFAAVPSSKIRRFSHALRYSSFSPSMKVLSSKSKVLTLLHCSSFLQVRRFSRCFVVVPSLQVRR
FSPPSLKVLTCFGKVPSSQVRRFSRASLQFLPPNSKVSKALTRCASLQFLPPSSKVLMRFAATFLQVRRFSHALLQFLPPSSKVPSRASLAPSPSSKALLSTPPFEGSPL
RFSFSKFEGSPLLLFKCLAAVDGLVPLHLQMLAVDGVRFASSSKN