CuGenDBv2

Gene ID	Lag0010776
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr1:6160102..6167910
RNA-Seq Expression	Lag0010776
Synteny	Lag0010776
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033091.1 putative Gag-pol protein [Cucumis melo var. makuwa]

1.5e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PSLS V++VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ IL REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

TYJ97414.1 pol protein [Cucumis melo var. makuwa]

3.4e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PSLS V +VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ IL REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

TYK04282.1 pol protein [Cucumis melo var. makuwa]

1.5e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PS S V +VFHVSML++Y+A P H VDFE LQ+SENL+YEE+P+ IL+REVK LRNREI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

XP_038890916.1 uncharacterized protein LOC120080343 [Benincasa hispida]

7.6e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRFG+KGKLS RF+GPFEILERIGS+AYRL   PSLS V N+FHVSML+KY+  P+H VDFE LQL+ENL+YEE+P  I+ REVKVLRNRE+ L+K
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

XP_038896625.1 uncharacterized protein LOC120084887 [Benincasa hispida]

8.9e-33

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIGSVAYRLAL PSLS V NVFHVSML+KYL  P H VDFE LQL++NL+YEE+P+ ++ REVKVLR++E+ LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUC9 Putative Gag-pol protein

7.4e-33

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PSLS V++VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ IL REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

A0A5A7VIZ6 Pol protein

3.7e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PSLS V +VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ I  REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

A0A5D3BEF2 Pol protein

1.6e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PSLS V +VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ IL REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

A0A5D3BN36 Pol protein

3.7e-32

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PS S V +VFHVSML+KY+A P H VDFE LQ+SENL+YEE+P+ IL REVK LR+REI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

A0A5D3BZG7 Pol protein

7.4e-33

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Query:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK
        MKGVLRF +KGKLSPRF+GPFEILERIG VAYRLAL PS S V +VFHVSML++Y+A P H VDFE LQ+SENL+YEE+P+ IL+REVK LRNREI+LVK
Subjt:  MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGGAGTTTTGAGGTTTGGAAGAAAAGGCAAGCTTAGTCCACGTTTCATTGGTCCGTTTGAGATCTTAGAACGGATTGGTTCGGTAGCTTATCGTCTAGCGTTGTC
GCCTTCTCTTTCGAAGGTACAAAATGTTTTCCATGTCTCCATGCTGCAAAAGTATCTGGCAACTCCAGCCCACAGAGTGGACTTCGAAGCTTTGCAACTGAGCGAGAACT
TGACTTATGAGGAGAGACCTATGCTAATTCTTGATAGAGAGGTGAAGGTCCTTCGTAATCGCGAAATAACGCTCGTAAAGAAAAAAAATCTCAAACTTCTCCCTCACGTT
CTCTCTCTCTCGTGCCTCATCCCTCTCGGCTCTCTCTTTCTCGTCTGCACGCCCGCGCCGCCGCCTCCTTTGCCGCCGCTCGTCGTCGATCCGCGCTGTCCGGCCGTCCA
CAGTTCCACTGTTGCCTCTATCGTCTTGTCGTCGCGCCTCGTCGTGAGGCGCTGTCGCCGCCGTCTCCCACCGTGGAGTGCCGCCTCAGACCCGTCGTCGCAACCTCAAG
CAGCCACTGTCGCCCTCGATCTCATCCGTTTTTCGGATCTGTGGTCGCCGTCATTTAAGTTTGTTTGTCACTGTTTGGATCTGTGTGTCGCTTTACGATTTGTTGTCATC
GTCGTTCGATTATTCAGCCTTACTTCTAGAGAATTAGTTGGGTGCCTTCTACTATCAGAAGGAGTAGAGATCTCCCAAAATGCCCACATGTGCACCTTTAGTGAGTTGCC
AAATTATGTAGTCGTCTTCGCGCCGCCTGCCCTCTGTAGTTGCAGCCGCCACTCAGTTCACGACGCCGCCGTTGTCCTCGCGTCGCCGTCGCCATCCCTCCTAGCCGAGG
CTTGTAGCAGTTTGCCGAGCCTCTCTCTGCGCATCTCTCTCCCTTTCGACAGATCTCTCTCTCTCTCTCTCGGCGGTCTCTCCCTCTCTTCCTCGTGCGTGGAAGCCCCA
ACCGTCACCGTTTCCGCTTGCAGCCGAGCGCCGCCGTCCGTGGGTGCAGCCGTCGCCGCCGCTTGCTCGTGTCGTGCCGCCTTTCTCTTTTCCTTCAGTTTTTCAACAAG
AAAACCTCGTGGATCTTGCGCAGACAGCAGCGTGAAGCACCGTCTCCTCCGCGTTTCAGCCTTAAAGGTCATGGCAGCGGAGATTCCGTTTCCTCGCGTTTTTGCCTCTG
TCCAGCAGCGTTACTGGGTGTTTTTGGCATCACTTAACAACTCCGGTAAGTTTAAACGCTTACCCATGTTCAATTGGTGCCTAGAGTTAATTACCCATAATGTTAAGGTG
TTGGAAAATCTAAGTAGCCTTGAAAATTTTGTTCTGCAGCGCCGTCTTTGCTCTAATCTTGGGTGTCTCGACGTGTTTAAGCGATTTCGGGAAGTCTAG

mRNA sequence

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Protein sequence

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MKGVLRFGRKGKLSPRFIGPFEILERIGSVAYRLALSPSLSKVQNVFHVSMLQKYLATPAHRVDFEALQLSENLTYEERPMLILDREVKVLRNREITLVKKKNLKLLPHV
LSLSCLIPLGSLFLVCTPAPPPPLPPLVVDPRCPAVHSSTVASIVLSSRLVVRRCRRRLPPWSAASDPSSQPQAATVALDLIRFSDLWSPSFKFVCHCLDLCVALRFVVI
VVRLFSLTSRELVGCLLLSEGVEISQNAHMCTFSELPNYVVVFAPPALCSCSRHSVHDAAVVLASPSPSLLAEACSSLPSLSLRISLPFDRSLSLSLGGLSLSSSCVEAP
TVTVSACSRAPPSVGAAVAAACSCRAAFLFSFSFSTRKPRGSCADSSVKHRLLRVSALKVMAAEIPFPRVFASVQQRYWVFLASLNNSGKFKRLPMFNWCLELITHNVKV
LENLSSLENFVLQRRLCSNLGCLDVFKRFREV

Lag0010776 (gene) of Sponge gourd (AG-4) v1 genome