CuGenDBv2

Gene ID	Lag0010777
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr1:6167989..6171091
RNA-Seq Expression	Lag0010777
Synteny	Lag0010777
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035938.1 pol protein [Cucumis melo var. makuwa]

2.1e-47

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWDAHLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

KAA0041424.1 pol protein [Cucumis melo var. makuwa]

9.4e-48

52.48

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ WDEVGE++L+GPEL+++++E +  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

2.7e-47

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+SLQ A+            G +L   TA      G+           
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
            E L+    +   +L++  ++    GSWD+HLHLMEF YN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

KAA0060848.1 pol protein [Cucumis melo var. makuwa]

7.2e-48

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ WDEVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

KAA0061322.1 pol protein [Cucumis melo var. makuwa]

2.7e-47

52.48

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++   +GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

1.0e-47

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWDAHLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

A0A5A7TDB5 Pol protein

4.5e-48

52.48

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ WDEVGE++L+GPEL+++++E +  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

A0A5A7THE6 Reverse transcriptase

1.3e-47

52.48

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

A0A5A7U330 Reverse transcriptase

1.3e-47

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+SLQ A+            G +L   TA      G+           
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
            E L+    +   +L++  ++    GSWD+HLHLMEF YN+SYQATIGM+PFEALYGK CRSP+ W EVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

A0A5A7UZZ4 Pol protein

3.5e-48

52.97

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DRLTKSAHF+ GK TY   KWAQLYM+ IVRLHGVPVSIVSDRD RFTS FW+ LQ A+            G +L   TA      G+        E  
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA
                        +L++  ++    GSWD+HLHLMEFAYN+SYQATIGM+PFEALYGK CRSP+ WDEVGE++L+GPEL+++++E I  IRSRM  A
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMA

Query:  QS
        QS
Subjt:  QS

SwissProt top hits

e value

%identity

Alignment

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.7e-10

28.49

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DR +K AHF+  + T    +   L    I   HG P +I SDRD R T+D ++ L + LG  S   S+     +    +  ++  L           AY
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYW--DEVGERQLLGPELIK
        V                  S  +Q     +W  +L  +EF YNS+   T+G SPFE   G    +P     DEV  R     EL K
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYW--DEVGERQLLGPELIK

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.4e-09

27.42

Show/hide

Query:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY
        +DR +K AHF+  + T    +   L    I   HG P +I SDRD R T+D ++ L + LG  S   S            A+     G+    +      
Subjt:  MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAY

Query:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYW--DEVGERQLLGPELIK
        +  +               S  +Q     +W  +L  +EF YNS+   T+G SPFE   G    +P     DEV  R     EL K
Subjt:  VGGFENLDSKRCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYW--DEVGERQLLGPELIK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACAGACTCACCAAGTCAGCGCATTTTCTCACGGGGAAGCCTACTTACATTGTTGAAAAGTGGGCACAATTATATATGACAGTGATAGTCAGGCTTCATGGGGTGCC
GGTATCAATCGTTTCAGATAGAGACCCTCGGTTCACGTCTGACTTCTGGAGGAGTCTGCAAAGAGCCTTGGGTGCGCATAGCGTTTGGAGGTCGAGTTGTCGAATCGGAG
CGAAACTTGGAAGTTGGACAGCAAGTAGTGTTTCTGTTTTAGGTGAGTTTCCGCATTGGGTAAGTTGGTTTGAGGCTTATGTGGGTGGATTTGAGAACTTGGACAGCAAG
CGGTGCTTCTGTTTTGGTTTGCTAAAGAGCCTTGGAGTTCAGAAATTTGTTGAAGGTAGCTGGGATGCACACTTGCATTTAATGGAATTTGCTTATAACAGTAGTTATCA
AGCAACCATCGGTATGTCACCGTTTGAGGCCCTCTATGGGAAAAGATGCAGGTCTCCTATTTATTGGGATGAGGTCGGAGAACGTCAGTTGTTGGGACCTGAATTGATTA
AAGCCTCCAGTGAGGTCATTCACACAATCAGATCGAGGATGCTAATGGCCCAAAGCTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDRLTKSAHFLTGKPTYIVEKWAQLYMTVIVRLHGVPVSIVSDRDPRFTSDFWRSLQRALGAHSVWRSSCRIGAKLGSWTASSVSVLGEFPHWVSWFEAYVGGFENLDSK
RCFCFGLLKSLGVQKFVEGSWDAHLHLMEFAYNSSYQATIGMSPFEALYGKRCRSPIYWDEVGERQLLGPELIKASSEVIHTIRSRMLMAQS

Lag0010777 (gene) of Sponge gourd (AG-4) v1 genome