; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010789 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010789
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:6693817..6694881
RNA-Seq ExpressionLag0010789
SyntenyLag0010789
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022147761.1 uncharacterized protein LOC111016619 [Momordica charantia]5.7e-4052.9Show/hide
Query:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ
        MK KVP KFK+P  K+YDG  DP+ HL+ Y  W D +G+++AIRCR F FTLTGS R WF++LKR+SIS FKELA+AF+ QF G     +P   LLT+KQ
Subjt:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ

Query:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAE
        +  ESL+DY+ RFN E LQVEG  +   L+    G++DE+L+ S GK    T++E
Subjt:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAE

XP_022150035.1 uncharacterized protein LOC111018307 [Momordica charantia]1.3e-4154.66Show/hide
Query:  EEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLT
        EE+MK KVP KFK+P  KQ+DG  D V HL+AYR WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT
Subjt:  EEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLT

Query:  VKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        +KQ+  ESL DY+ RFN+E LQVEG     +L+A    + DE L  S GK  P T++E +S
Subjt:  VKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

XP_022158344.1 uncharacterized protein LOC111024851 [Momordica charantia]1.6e-4255.06Show/hide
Query:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ
        MK K   KFK+P   +YDG  DP+ HL+AYR W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ

Query:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        +  ESL++Y+ RFN+E LQVEG  +  AL+A   G++DERL+ S GK  P T+ E +S
Subjt:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.1e-4841.25Show/hide
Query:  KTADE-RLVRDPRKGKEPMEHTVESETRSKGKKTDNMTSKVR-GLKPTDRTIFRSPKSSTLKGCDYTVSTPSYGHTKTDLRNMIVEKRRSAKTAESEAKA
        K +DE  LVRDP+KGK P E   E  T S G       SK+R G     RT    P+ +  +   +    P+ G +  D RN             SE  +
Subjt:  KTADE-RLVRDPRKGKEPMEHTVESETRSKGKKTDNMTSKVR-GLKPTDRTIFRSPKSSTLKGCDYTVSTPSYGHTKTDLRNMIVEKRRSAKTAESEAKA

Query:  VEAEARAAEAEARAAKAEAKARLAEAEAKKDDLPWKIELLNALKELGNPQGDQQKSKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKK
        ++                        + K  D P   E  ++ KE G               +LEEL DQ DSPFTEE+M+ KVP KFK+P  KQ+D   
Subjt:  VEAEARAAEAEARAAKAEAKARLAEAEAKKDDLPWKIELLNALKELGNPQGDQQKSKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKK

Query:  DPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVE
        DPV HL+AYR WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT+KQ+  ESLRDY+ RFN+E LQVE
Subjt:  DPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVE

Query:  GYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        G  +  +L+A   G+ DE L  S GK  P T++E +S
Subjt:  GYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

XP_022159109.1 uncharacterized protein LOC111025548 [Momordica charantia]1.6e-4752Show/hide
Query:  LNALKELGNPQGDQQK--SKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARH
        LN  K +  P+  +++   K+ G  +LEEL  Q DSPFTEE+M+ KVP KFK+P  K +DG  +PV HL+AYR WMD +GVSDAIRCR F  TL GSAR 
Subjt:  LNALKELGNPQGDQQK--SKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARH

Query:  WFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG  +  +L+A   G+ DE L  S  K  P T++E +S
Subjt:  WFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

TrEMBL top hitse value%identityAlignment
A0A6J1D3B7 uncharacterized protein LOC1110166192.7e-4052.9Show/hide
Query:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ
        MK KVP KFK+P  K+YDG  DP+ HL+ Y  W D +G+++AIRCR F FTLTGS R WF++LKR+SIS FKELA+AF+ QF G     +P   LLT+KQ
Subjt:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ

Query:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAE
        +  ESL+DY+ RFN E LQVEG  +   L+    G++DE+L+ S GK    T++E
Subjt:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAE

A0A6J1D7D2 uncharacterized protein LOC1110183076.5e-4254.66Show/hide
Query:  EEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLT
        EE+MK KVP KFK+P  KQ+DG  D V HL+AYR WMD +GVS+A++CR F  TL+GSAR WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT
Subjt:  EEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLT

Query:  VKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        +KQ+  ESL DY+ RFN+E LQVEG     +L+A    + DE L  S GK  P T++E +S
Subjt:  VKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

A0A6J1DWY0 uncharacterized protein LOC1110252935.5e-4941.25Show/hide
Query:  KTADE-RLVRDPRKGKEPMEHTVESETRSKGKKTDNMTSKVR-GLKPTDRTIFRSPKSSTLKGCDYTVSTPSYGHTKTDLRNMIVEKRRSAKTAESEAKA
        K +DE  LVRDP+KGK P E   E  T S G       SK+R G     RT    P+ +  +   +    P+ G +  D RN             SE  +
Subjt:  KTADE-RLVRDPRKGKEPMEHTVESETRSKGKKTDNMTSKVR-GLKPTDRTIFRSPKSSTLKGCDYTVSTPSYGHTKTDLRNMIVEKRRSAKTAESEAKA

Query:  VEAEARAAEAEARAAKAEAKARLAEAEAKKDDLPWKIELLNALKELGNPQGDQQKSKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKK
        ++                        + K  D P   E  ++ KE G               +LEEL DQ DSPFTEE+M+ KVP KFK+P  KQ+D   
Subjt:  VEAEARAAEAEARAAKAEAKARLAEAEAKKDDLPWKIELLNALKELGNPQGDQQKSKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKK

Query:  DPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVE
        DPV HL+AYR WMD +GVS+A+RCR F  TL GSAR WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT+KQ+  ESLRDY+ RFN+E LQVE
Subjt:  DPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVE

Query:  GYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        G  +  +L+A   G+ DE L  S GK  P T++E +S
Subjt:  GYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

A0A6J1DZ49 uncharacterized protein LOC1110248517.7e-4355.06Show/hide
Query:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ
        MK K   KFK+P   +YDG  DP+ HL+AYR W D + + +AIRCR F FTLTGSAR+WF +LKR SIS FKELA+AF+ QF+G R   KP   LLT+KQ
Subjt:  MKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQ

Query:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        +  ESL++Y+ RFN+E LQVEG  +  AL+A   G++DERL+ S GK  P T+ E +S
Subjt:  QPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

A0A6J1E1E7 uncharacterized protein LOC1110255488.0e-4852Show/hide
Query:  LNALKELGNPQGDQQK--SKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARH
        LN  K +  P+  +++   K+ G  +LEEL  Q DSPFTEE+M+ KVP KFK+P  K +DG  +PV HL+AYR WMD +GVSDAIRCR F  TL GSAR 
Subjt:  LNALKELGNPQGDQQK--SKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKKDPVQHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARH

Query:  WFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS
        WF +LKR SIS FK LA+AF+ QF+G R   +P   LLT+KQ+  ESL DY+ RFN+E LQ+EG  +  +L+A   G+ DE L  S  K  P T++E +S
Subjt:  WFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITVGLEDERLLNSIGKSQPRTYAEFVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATAATTTGTCTAGGATACTACGTATATTGGATAAACCTGGTCCTAGCACTAAAACCGCAGATGAGAGGCTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCTAT
GGAGCACACTGTAGAGTCAGAGACGAGGTCAAAGGGAAAGAAGACTGACAACATGACAAGCAAGGTCAGGGGGCTCAAACCTACTGATCGCACGATTTTTAGGAGCCCAA
AGTCAAGCACACTTAAGGGGTGTGACTACACAGTTTCTACCCCAAGCTACGGTCATACTAAGACAGACCTGAGGAATATGATCGTTGAGAAGCGCAGAAGTGCCAAAACT
GCCGAGTCCGAGGCCAAAGCCGTCGAAGCTGAAGCGCGAGCTGCCGAGGCCGAGGCCAGAGCAGCCAAGGCCGAGGCCAAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAA
AGACGACCTCCCTTGGAAGATCGAGCTTCTAAACGCACTAAAGGAGCTCGGAAATCCTCAGGGAGACCAGCAGAAGTCAAAGGACCTTGGAGATCAAAACTTGGAAGAAC
TAGCCGACCAAGTCGATTCGCCCTTCACAGAAGAAGTCATGAAAGCCAAGGTGCCTCAAAAGTTTAAGGTACCCAAGTTCAAACAGTACGATGGCAAGAAAGACCCTGTG
CAACATCTAAATGCATACAGAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAGCCAGGCACTGGTTTGA
GAGGCTAAAAAGGAGATCCATCAGCTGTTTCAAAGAGTTGGCCCAAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACTACACAAGCCTCACATCAACCTCCTAACAG
TCAAACAGCAGCCAGGTGAGAGCTTACGTGATTACATAACGCGTTTTAACGATGAAGCACTGCAGGTTGAGGGATACAACGAGGGAACAGCCCTAGTAGCCATAACAGTC
GGTCTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCATAATTTGTCTAGGATACTACGTATATTGGATAAACCTGGTCCTAGCACTAAAACCGCAGATGAGAGGCTGGTTAGGGATCCGAGGAAGGGGAAGGAGCCTAT
GGAGCACACTGTAGAGTCAGAGACGAGGTCAAAGGGAAAGAAGACTGACAACATGACAAGCAAGGTCAGGGGGCTCAAACCTACTGATCGCACGATTTTTAGGAGCCCAA
AGTCAAGCACACTTAAGGGGTGTGACTACACAGTTTCTACCCCAAGCTACGGTCATACTAAGACAGACCTGAGGAATATGATCGTTGAGAAGCGCAGAAGTGCCAAAACT
GCCGAGTCCGAGGCCAAAGCCGTCGAAGCTGAAGCGCGAGCTGCCGAGGCCGAGGCCAGAGCAGCCAAGGCCGAGGCCAAGGCTAGGTTGGCCGAGGCCGAGGCCAAGAA
AGACGACCTCCCTTGGAAGATCGAGCTTCTAAACGCACTAAAGGAGCTCGGAAATCCTCAGGGAGACCAGCAGAAGTCAAAGGACCTTGGAGATCAAAACTTGGAAGAAC
TAGCCGACCAAGTCGATTCGCCCTTCACAGAAGAAGTCATGAAAGCCAAGGTGCCTCAAAAGTTTAAGGTACCCAAGTTCAAACAGTACGATGGCAAGAAAGACCCTGTG
CAACATCTAAATGCATACAGAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCGCGCATTCTTTTTCACTCTGACAGGATCAGCCAGGCACTGGTTTGA
GAGGCTAAAAAGGAGATCCATCAGCTGTTTCAAAGAGTTGGCCCAAGCATTCCTTGCACAGTTCATGGGAGCCAGAGAACTACACAAGCCTCACATCAACCTCCTAACAG
TCAAACAGCAGCCAGGTGAGAGCTTACGTGATTACATAACGCGTTTTAACGATGAAGCACTGCAGGTTGAGGGATACAACGAGGGAACAGCCCTAGTAGCCATAACAGTC
GGTCTGGAAGACGAAAGACTGCTCAATTCGATAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCTAG
Protein sequenceShow/hide protein sequence
MDHNLSRILRILDKPGPSTKTADERLVRDPRKGKEPMEHTVESETRSKGKKTDNMTSKVRGLKPTDRTIFRSPKSSTLKGCDYTVSTPSYGHTKTDLRNMIVEKRRSAKT
AESEAKAVEAEARAAEAEARAAKAEAKARLAEAEAKKDDLPWKIELLNALKELGNPQGDQQKSKDLGDQNLEELADQVDSPFTEEVMKAKVPQKFKVPKFKQYDGKKDPV
QHLNAYRSWMDFHGVSDAIRCRAFFFTLTGSARHWFERLKRRSISCFKELAQAFLAQFMGARELHKPHINLLTVKQQPGESLRDYITRFNDEALQVEGYNEGTALVAITV
GLEDERLLNSIGKSQPRTYAEFVS