CuGenDBv2

Gene ID	Lag0010804
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr1:7038913..7040908
RNA-Seq Expression	Lag0010804
Synteny	Lag0010804
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]

3.4e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

3.4e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]

3.4e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

3.4e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

3.4e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

3.7e-47

83.33

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MA+QEGLT EDNA+LRL+ELEALDEKRL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEV+TNGAYKI+D
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

A0A5A7U8J5 Ribonuclease H

1.7e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT+E N KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGLKI PING  +
Subjt:  KDGLKICPINGNLV

A0A5A7UD71 Uncharacterized protein

2.8e-47

85.09

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MA+QEGLT EDNA+LRLQELEALDEKRL AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEV+TNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

A0A5A7V098 Uncharacterized protein

2.8e-47

85.96

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MAVQEGLT EDN KLRLQELEALDEKRL+AQQALECYQARMSKAF+K V+PRSFQVG+LVLAVRRPIITTRH G+KFTPKWD PY VKEVYTNGAYKIVD
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGLKI PING  +
Subjt:  KDGLKICPINGNLV

A0A5D3D1E5 Ribonuclease H

2.2e-47

84.21

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Query:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD
        MA+QEGLT EDNA+LRLQELEALDEKRL+AQQALECYQARMSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWD PY VKEV+TNGAYKI+D
Subjt:  MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVD

Query:  KDGLKICPINGNLV
        +DGL+I PING  +
Subjt:  KDGLKICPINGNLV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCGGTGCAAGAAGGTTTGACTGTAGAAGACAATGCTAAGTTACGTCTTCAAGAGTTAGAAGCATTAGATGAGAAAAGACTGGATGCTCAACAAGCTTTGGAATGCTA
TCAAGCGCGCATGTCTAAAGCTTTCAACAAAAAGGTACGACCTCGTTCATTTCAAGTTGGTGAGCTCGTACTCGCAGTTCGAAGACCTATCATCACAACTCGGCATACAG
GACACAAGTTTACACCTAAATGGGACGAACCCTACGCTGTGAAAGAAGTCTACACAAATGGAGCATATAAGATAGTTGACAAAGACGGACTCAAAATTTGCCCAATCAAC
GGCAATTTGGTGTTCCGCTCGCTCAAAGCTCGACGTCTCACCTTCTCCACGTTCGGAGATTGCTCCATTCAAGTTTGGCTTATCACTTGTCCCAAGTTCGATACCTCACT
TCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACCGTTGAAAACTTTGCTTCATTACAAATGTTGCCGATTGAAGACT
TCACTATCACTTCATCTTCAAAATTTGGCGGTCTACATCGCTTCATTTTCAAAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAGTCACTGCAATTG
AATCTGATGACGACCGTTGTAGGCAAGTTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACGGTCTAGCAGGAGTAAATCAGTGTAG

mRNA sequence

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Protein sequence

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MAVQEGLTVEDNAKLRLQELEALDEKRLDAQQALECYQARMSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDEPYAVKEVYTNGAYKIVDKDGLKICPIN
GNLVFRSLKARRLTFSTFGDCSIQVWLITCPKFDTSLHLQRVAFEGFVFTSSSNLQRLTVENFASLQMLPIEDFTITSSSKFGGLHRFIFKGNYSHQSDWSRQVVKSLQL
NLMTTVVGKLVTTPAGYSDHPIKWGRSSRSKSV

Lag0010804 (gene) of Sponge gourd (AG-4) v1 genome