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Lag0010805 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010805
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:7044079..7044600
RNA-Seq ExpressionLag0010805
SyntenyLag0010805
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]2.2e-2952.98Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        K GYDFT HTEFKSLKI  E+P+ SSTQKKL +EG+AIP SR GLGY  PEP+RITRK   KVVD +HITV+E+   E+K+  DSQ+ S FDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL
          V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL

KAA0050182.1 gag protease polyprotein [Cucumis melo var. makuwa]5.8e-3052.69Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+S+AG+GY   EPVRIT   K KV +  HITVEE  D ++ K D SQ+ SVFDRI  P  R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ + +KKV      PT  +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK

KAA0055891.1 uncharacterized protein E6C27_scaffold438G00090 [Cucumis melo var. makuwa]3.1e-3154.49Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+SRAG+GY   EPVRIT  RK KV +  HITVEE  D E+ KND SQ+ SVFDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ + +KKV      PT  +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-2953.64Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTTHTEFKSLKI  E+P+ SSTQKKL +EG+AIP SR GLGY  PEP+RITRK   K+VD++HITV+E+ D   +K  DSQ+ S FDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL
          V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]1.5e-3053.61Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAH--HITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+SRAG+GY+  EPVRIT K KV  A+  HITVEE  D E+ K D SQ+ SVFDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAH--HITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSK-KVDKPT----RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ S  K +   PT    +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSK-KVDKPT----RSVFDRLQATYDQCKRK

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H1.1e-2952.98Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        K GYDFT HTEFKSLKI  E+P+ SSTQKKL +EG+AIP SR GLGY  PEP+RITRK   KVVD +HITV+E+   E+K+  DSQ+ S FDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL
          V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL

A0A5A7U2W9 Gag protease polyprotein2.8e-3052.69Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+S+AG+GY   EPVRIT   K KV +  HITVEE  D ++ K D SQ+ SVFDRI  P  R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ + +KKV      PT  +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK

A0A5A7UQP2 Integrase catalytic domain-containing protein1.5e-3154.49Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+SRAG+GY   EPVRIT  RK KV +  HITVEE  D E+ KND SQ+ SVFDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRIT--RKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ + +KKV      PT  +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDK----PT--RSVFDRLQATYDQCKRK

A0A5D3C0W6 Ty3-gypsy retrotransposon protein8.1e-3053.64Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTTHTEFKSLKI  E+P+ SSTQKKL +EG+AIP SR GLGY  PEP+RITRK   K+VD++HITV+E+ D   +K  DSQ+ S FDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKW--KVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL
          V +RL  + +E++    TS   RRS F+RLS++  K    P   + +RL
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRL

A0A5D3C783 Ribonuclease H7.4e-3153.61Show/hide
Query:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAH--HITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR
        KAGYDFTT TE KS+KIFDERPE S TQKKLQK+GY+IP+SRAG+GY+  EPVRIT K KV  A+  HITVEE  D E+ K D SQ+ SVFDRI     R
Subjt:  KAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAH--HITVEEMSDPEDKKNDDSQKISVFDRIKAPTTR

Query:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSK-KVDKPT----RSVFDRLQATYDQCKRK
         SV QR+  S ++   +  T + TR S FQRL+ S  K +   PT    +S F RL  +  + ++K
Subjt:  LSVHQRLKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSK-KVDKPT----RSVFDRLQATYDQCKRK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATACAAATCCTAGAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAAAAATCTTCGATGAGAGACCTGAGCCTTCTTCGACACAGAAGAAGCT
CCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCCAGAGCCAGTTCGTATAACCAGAAAATGGAAAGTTGTAGATGCACATCACATAA
CAGTAGAAGAGATGAGCGATCCAGAAGATAAAAAGAATGATGATAGCCAGAAAATCTCTGTCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAACGG
CTGAAATATTCATCTTCGGAAAAGGAAGGTCGGAGTAAAACTTCCACTCCTACCCGACGTTCAGTGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATAAACC
GACGAGATCCGTGTTCGATCGCCTTCAAGCAACCTATGACCAATGCAAGAGAAAGTTGAAAAATCTTGAAACAGATGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCATACAAATCCTAGAAAGGCAGGATACGACTTTACAACTCATACTGAGTTTAAAAGTCTAAAAATCTTCGATGAGAGACCTGAGCCTTCTTCGACACAGAAGAAGCT
CCAGAAAGAAGGTTATGCCATACCATCCTCGAGAGCCGGACTAGGGTACAATCCCCCAGAGCCAGTTCGTATAACCAGAAAATGGAAAGTTGTAGATGCACATCACATAA
CAGTAGAAGAGATGAGCGATCCAGAAGATAAAAAGAATGATGATAGCCAGAAAATCTCTGTCTTCGATCGCATTAAAGCGCCGACTACTCGTCTTTCAGTTCATCAACGG
CTGAAATATTCATCTTCGGAAAAGGAAGGTCGGAGTAAAACTTCCACTCCTACCCGACGTTCAGTGTTTCAGCGTTTGAGTGTGTCTACATCGAAGAAAGTAGATAAACC
GACGAGATCCGTGTTCGATCGCCTTCAAGCAACCTATGACCAATGCAAGAGAAAGTTGAAAAATCTTGAAACAGATGAATGA
Protein sequenceShow/hide protein sequence
MHTNPRKAGYDFTTHTEFKSLKIFDERPEPSSTQKKLQKEGYAIPSSRAGLGYNPPEPVRITRKWKVVDAHHITVEEMSDPEDKKNDDSQKISVFDRIKAPTTRLSVHQR
LKYSSSEKEGRSKTSTPTRRSVFQRLSVSTSKKVDKPTRSVFDRLQATYDQCKRKLKNLETDE