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Lag0010809 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010809
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 4D
Genome locationchr1:7074953..7077286
RNA-Seq ExpressionLag0010809
SyntenyLag0010809
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01611.1 THO complex subunit 4D [Cucumis melo var. makuwa]4.5e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]4.5e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]4.5e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]1.0e-1687.27Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIE+LGDNAEM VS RINVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]3.5e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDG+PMKIEMLGDNAEM VS RINVTGVNGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein2.2e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

A0A1S3C452 THO complex subunit 4D2.2e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

A0A5D3BPA9 THO complex subunit 4D2.2e-1789.09Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNAEM VS RINVTG NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

A0A6J1CP51 THO complex subunit 4D-like4.9e-1787.27Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIE+LGDNAEM VS RINVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

A0A6J1J564 THO complex subunit 4D-like8.3e-1787.27Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR
        GS EVVYTRRSDAFA LK YNNVLLDGKPMKIEMLGDNA+  VS RINVTGVNGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGR

SwissProt top hitse value%identityAlignment
Q6NQ72 THO complex subunit 4D3.5e-1250.67Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGRRCEIGLDLTVKEGGDG
        G+ EVVY RRSDAF  LK YNNVLLDG+PM++E+LG N    A +     +NVTG+NGR   +   + +++GG G
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGRRCEIGLDLTVKEGGDG

Q8L719 THO complex subunit 4B4.4e-0746.03Show/hide
Query:  EMRNLGVRYDDDRGGVGVCLVYAHQGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN
        +++  G+ Y  DR G         +G+ EVV++RR DA A +K YNNV LDGK MKIE++G N
Subjt:  EMRNLGVRYDDDRGGVGVCLVYAHQGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN

Q8L773 THO complex subunit 4A2.0e-0760.98Show/hide
Query:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAE
        +G+ EVVY+RR DA A +K YN+V LDGKPMKIE++G N +
Subjt:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAE

Q94EH8 THO complex subunit 4C7.0e-1364.29Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR
        GS EVVY RRSDA   ++ YNNVLLDG+PMK+E+LG N E   V+ R+NVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-1464.29Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR
        GS EVVY RRSDA   ++ YNNVLLDG+PMK+E+LG N E   V+ R+NVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein5.0e-1464.29Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR
        GS EVVY RRSDA   ++ YNNVLLDG+PMK+E+LG N E   V+ R+NVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAEML-VSTRINVTGVNGR

AT5G37720.1 ALWAYS EARLY 42.5e-1350.67Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGRRCEIGLDLTVKEGGDG
        G+ EVVY RRSDAF  LK YNNVLLDG+PM++E+LG N    A +     +NVTG+NGR   +   + +++GG G
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGRRCEIGLDLTVKEGGDG

AT5G37720.2 ALWAYS EARLY 41.2e-1259.32Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGR
        G+ EVVY RRSDAF  LK YNNVLLDG+PM++E+LG N    A +     +NVTG+NGR
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDN----AEMLVSTRINVTGVNGR

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-0860.98Show/hide
Query:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAE
        +G+ EVVY+RR DA A +K YN+V LDGKPMKIE++G N +
Subjt:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPMKIEMLGDNAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTTCCTCTCATCGGCGACGGCACGTTGTGGATTGTCATGGGTTTCTTCTTCTCACAGGTGGTGTGGCGTGGGTTGCTGTGGGTGTTACTTTTTTTGTCGTGGGT
AGTTGTTCTTTGCTGTGGGTGGTTGTTTCGACCGTGGGCAGTGGACGTTGAGGTCGTGGGTTTTGCTCGCTTGTTCAATTTTCTGCAATTGTTGTGTAAAGAGATGAGAA
ATTTAGGAGTTCGATACGATGATGACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGGCTCGACAGAGGTGGTGTATACTCGTAGAAGTGATGCATTTGCT
ACTCTGAAGTGCTATAACAATGTTTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGTTAGTTTCTACACGTATAAATGTTACTGGAGT
GAATGGAAGAAGATGTGAGATCGGATTAGATCTAACAGTCAAGGAGGGTGGAGATGGTACTTTGTTTGCTCAACTGATTGTGATCCAGAAGCTAACACTTGAGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTCTTCCTCTCATCGGCGACGGCACGTTGTGGATTGTCATGGGTTTCTTCTTCTCACAGGTGGTGTGGCGTGGGTTGCTGTGGGTGTTACTTTTTTTGTCGTGGGT
AGTTGTTCTTTGCTGTGGGTGGTTGTTTCGACCGTGGGCAGTGGACGTTGAGGTCGTGGGTTTTGCTCGCTTGTTCAATTTTCTGCAATTGTTGTGTAAAGAGATGAGAA
ATTTAGGAGTTCGATACGATGATGACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGGCTCGACAGAGGTGGTGTATACTCGTAGAAGTGATGCATTTGCT
ACTCTGAAGTGCTATAACAATGTTTTACTGGATGGGAAGCCAATGAAGATTGAAATGCTTGGTGATAATGCTGAAATGTTAGTTTCTACACGTATAAATGTTACTGGAGT
GAATGGAAGAAGATGTGAGATCGGATTAGATCTAACAGTCAAGGAGGGTGGAGATGGTACTTTGTTTGCTCAACTGATTGTGATCCAGAAGCTAACACTTGAGGGATGA
Protein sequenceShow/hide protein sequence
MFLPLIGDGTLWIVMGFFFSQVVWRGLLWVLLFLSWVVVLCCGWLFRPWAVDVEVVGFARLFNFLQLLCKEMRNLGVRYDDDRGGVGVCLVYAHQGSTEVVYTRRSDAFA
TLKCYNNVLLDGKPMKIEMLGDNAEMLVSTRINVTGVNGRRCEIGLDLTVKEGGDGTLFAQLIVIQKLTLEG