; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010856 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010856
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontransportin-3 isoform X2
Genome locationchr1:8048586..8051249
RNA-Seq ExpressionLag0010856
SyntenyLag0010856
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055987.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]8.2e-0932.56Show/hide
Query:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET
        IKK++ V ++      VITR   ++DW+ I   LK++   +   +PF+A+KAL+  KD    K     V   S +K          G  C G   +   T
Subjt:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET

Query:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
        +N  N ++A I+V+ N CGFIPA + + D
Subjt:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
KAG6581155.1 Transportin-3, partial [Cucurbita argyrosperma subsp. sororia]2.6e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
TYK27679.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.8e-0932.56Show/hide
Query:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET
        IKK++ V ++  +   VITR   ++DW+ I   LK++   +   +PF+A+KAL+  KD    K     V   S +K          G  C G   +   T
Subjt:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET

Query:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
        +N  N ++A I+V+ N CGFIPA + + D
Subjt:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]2.6e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]5.2e-0369.23Show/hide
Query:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
        L L+LA+GI+ESV SHA AF   KICED TAV FEL NL
Subjt:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
XP_023526726.1 transportin-3 isoform X1 [Cucurbita pepo subsp. pepo]2.6e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
TrEMBL top hitse value%identityAlignment
A0A1S3BN70 transportin-3 isoform X11.3e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
A0A1S3BN70 transportin-3 isoform X12.1e-0266.67Show/hide
Query:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
        L L+LA+GI+ESV SHA AF   KICED TAV FE  NL
Subjt:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
A0A1S3BN70 transportin-3 isoform X11.3e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
A0A5A7U2P7 Transportin-3 isoform X11.3e-0784.44Show/hide
Query:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        LRC H EI  LAASGSLL VSFQKAA CC+AMHRGAALAAMSYLS
Subjt:  LRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
A0A5A7U2P7 Transportin-3 isoform X12.1e-0265.79Show/hide
Query:  RLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
        +L+LA+GI+ESV SHA AF   KICED TAV FE  NL
Subjt:  RLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
A0A5A7UN08 LINE-1 retrotransposable element ORF2 protein4.0e-0932.56Show/hide
Query:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET
        IKK++ V ++      VITR   ++DW+ I   LK++   +   +PF+A+KAL+  KD    K     V   S +K          G  C G   +   T
Subjt:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET

Query:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
        +N  N ++A I+V+ N CGFIPA + + D
Subjt:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
A0A5D3DW73 LINE-1 retrotransposable element ORF2 protein1.4e-0932.56Show/hide
Query:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET
        IKK++ V ++  +   VITR   ++DW+ I   LK++   +   +PF+A+KAL+  KD    K     V   S +K          G  C G   +   T
Subjt:  IKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADKALLKMKD---FKGFAGRVLLDSWQKMG--------GKECGGLISISLET

Query:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
        +N  N ++A I+V+ N CGFIPA + + D
Subjt:  INSLNCIDASIEVKKNQCGFIPAEVVVHD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12930.1 ARM repeat superfamily protein4.4e-0869.57Show/hide
Query:  LLRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
        L+R  H E  LL  SG+LL +SF KAA CC+AMHRGAALAAMSYLS
Subjt:  LLRCDHLEIGLLAASGSLLVVSFQKAAFCCSAMHRGAALAAMSYLS
AT1G12930.1 ARM repeat superfamily protein1.4e-0358.97Show/hide
Query:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL
        L L+LA GISE + SHA A    KICED  AV  E SNL
Subjt:  LRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTTGGGAGATGTTGGATGAATTCCAACAAAAATCTAAAAATCCAGTAGAGTTTTGCAAGCTGAATGAGGATATTTTTGAGGCACGTCTTGGCAGCAATGATGG
CAATAGCATCCCGGCCTTTTCAGCTTCTGTGGAATGCAACGTGGAGCCTTTTTCTAAGGGGTTTTGGATCAAAAAAGAAAAGGAGGTGGCAATTATAGACTTTGATGAAG
TTTTTGTTATAACAAGACTTCATTCTTTTGAGGATTGGAGGTATATTTCTGAAATTTTGAAGAAAGAAGTTTCTGAAAGTTGTATAATCAATCCATTTTCTGCAGATAAA
GCTTTGCTTAAAATGAAGGATTTTAAAGGGTTTGCTGGTAGAGTACTTCTTGATTCTTGGCAAAAGATGGGAGGCAAGGAATGTGGTGGGCTCATTAGTATTTCTTTGGA
AACAATTAATTCGTTGAATTGCATTGATGCTTCCATTGAGGTGAAAAAGAATCAATGTGGTTTCATTCCAGCTGAAGTTGTTGTTCATGATTCCATTCTTGGGGATGTTG
TGGTCCAAATCTCTCCTTCAATTGGATTTGGATCTTCCTCTAGGTCTGAATTTTTAGCATTATGTCTTCAGATTGGTTTTGAGATTGAAGGCTTGCATTATCACCATCTC
TTAATGAAGGAAGTCATGGAAGATGAAGGAGTTCCTACTTTTTCCAAGGTCCATGAATTAATTAGGCCGGTAGTTGAAAATTTAAATGAATTGCCTTCATGTTCTCGGTC
TCAGGGAGAAATTAATGAGGTGTTGGGTTCTCCAAAAGGTATTTTGTTGCATGATGAGGGCATTAATAACGTTAGTTGTATGGGATTTAATGATTGCATTCAAGAGATGG
ATCCCATTCTCTCTCCTCTTAAAGGTATTAATGATTATAATTACACCAGCCCTAAGGAATTCCAGCAGCCACTGTCCGTTGATTTTCCCCCGAAAGTATTAATGGCGCAA
GCAATCTTAAAAACTTATTATCGGAAAAAGGTTTCTCTGCCATTGGCTATCAAGTCTAATTTTAATGCCGATCATTTGGAATCTGAATGTACTCAAAGGATTGTTTCAAA
CAAGGTTTTGGAATCTTCAAAAGACAGTGGTGAAATTAGGTTTTCAAAATCCAAGGATTTCATTGAATCTTCTATTCAAATTCCAGGGGTAAAAAATCACTTCATCAGAG
GGGTTGCTTGCTCTTCCAGCCCTATAGCTCACTCTTCCTTGGATTCAGATGATGAGTCTTCGGTTAGTGTGAGTAGTGAGGATTCTGAGTCTTTGCATGCTGAAGAAGAT
TGTGTGGAACCCTTTTCAGAAGACCTAATTGGTGAGTCTTTGGCTTCCCTTTTTCCAGTTATGAAGATTGTCTCGTGGGAAGGTAATCTAAGATTATATCTTGCTTCTGG
GATCTCAGAATCTGTCCCTTCACATGCCAGTGCCTTTGTCCAAAGTAAAATTTGTGAAGATGTTACTGCTGTATTTTTTGAGCTGTCCAATTTGTCAGAATCCAATTTTC
TGGCTAATGCTGATCTTCTAAGGTGTGATCACTTGGAGATTGGATTATTAGCTGCATCTGGTTCTCTTTTGGTGGTTTCATTCCAGAAGGCTGCTTTTTGTTGCTCGGCT
ATGCATCGTGGGGCAGCGTTAGCAGCAATGTCATACCTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTTGGGAGATGTTGGATGAATTCCAACAAAAATCTAAAAATCCAGTAGAGTTTTGCAAGCTGAATGAGGATATTTTTGAGGCACGTCTTGGCAGCAATGATGG
CAATAGCATCCCGGCCTTTTCAGCTTCTGTGGAATGCAACGTGGAGCCTTTTTCTAAGGGGTTTTGGATCAAAAAAGAAAAGGAGGTGGCAATTATAGACTTTGATGAAG
TTTTTGTTATAACAAGACTTCATTCTTTTGAGGATTGGAGGTATATTTCTGAAATTTTGAAGAAAGAAGTTTCTGAAAGTTGTATAATCAATCCATTTTCTGCAGATAAA
GCTTTGCTTAAAATGAAGGATTTTAAAGGGTTTGCTGGTAGAGTACTTCTTGATTCTTGGCAAAAGATGGGAGGCAAGGAATGTGGTGGGCTCATTAGTATTTCTTTGGA
AACAATTAATTCGTTGAATTGCATTGATGCTTCCATTGAGGTGAAAAAGAATCAATGTGGTTTCATTCCAGCTGAAGTTGTTGTTCATGATTCCATTCTTGGGGATGTTG
TGGTCCAAATCTCTCCTTCAATTGGATTTGGATCTTCCTCTAGGTCTGAATTTTTAGCATTATGTCTTCAGATTGGTTTTGAGATTGAAGGCTTGCATTATCACCATCTC
TTAATGAAGGAAGTCATGGAAGATGAAGGAGTTCCTACTTTTTCCAAGGTCCATGAATTAATTAGGCCGGTAGTTGAAAATTTAAATGAATTGCCTTCATGTTCTCGGTC
TCAGGGAGAAATTAATGAGGTGTTGGGTTCTCCAAAAGGTATTTTGTTGCATGATGAGGGCATTAATAACGTTAGTTGTATGGGATTTAATGATTGCATTCAAGAGATGG
ATCCCATTCTCTCTCCTCTTAAAGGTATTAATGATTATAATTACACCAGCCCTAAGGAATTCCAGCAGCCACTGTCCGTTGATTTTCCCCCGAAAGTATTAATGGCGCAA
GCAATCTTAAAAACTTATTATCGGAAAAAGGTTTCTCTGCCATTGGCTATCAAGTCTAATTTTAATGCCGATCATTTGGAATCTGAATGTACTCAAAGGATTGTTTCAAA
CAAGGTTTTGGAATCTTCAAAAGACAGTGGTGAAATTAGGTTTTCAAAATCCAAGGATTTCATTGAATCTTCTATTCAAATTCCAGGGGTAAAAAATCACTTCATCAGAG
GGGTTGCTTGCTCTTCCAGCCCTATAGCTCACTCTTCCTTGGATTCAGATGATGAGTCTTCGGTTAGTGTGAGTAGTGAGGATTCTGAGTCTTTGCATGCTGAAGAAGAT
TGTGTGGAACCCTTTTCAGAAGACCTAATTGGTGAGTCTTTGGCTTCCCTTTTTCCAGTTATGAAGATTGTCTCGTGGGAAGGTAATCTAAGATTATATCTTGCTTCTGG
GATCTCAGAATCTGTCCCTTCACATGCCAGTGCCTTTGTCCAAAGTAAAATTTGTGAAGATGTTACTGCTGTATTTTTTGAGCTGTCCAATTTGTCAGAATCCAATTTTC
TGGCTAATGCTGATCTTCTAAGGTGTGATCACTTGGAGATTGGATTATTAGCTGCATCTGGTTCTCTTTTGGTGGTTTCATTCCAGAAGGCTGCTTTTTGTTGCTCGGCT
ATGCATCGTGGGGCAGCGTTAGCAGCAATGTCATACCTTTCTTAA
Protein sequenceShow/hide protein sequence
MVFWEMLDEFQQKSKNPVEFCKLNEDIFEARLGSNDGNSIPAFSASVECNVEPFSKGFWIKKEKEVAIIDFDEVFVITRLHSFEDWRYISEILKKEVSESCIINPFSADK
ALLKMKDFKGFAGRVLLDSWQKMGGKECGGLISISLETINSLNCIDASIEVKKNQCGFIPAEVVVHDSILGDVVVQISPSIGFGSSSRSEFLALCLQIGFEIEGLHYHHL
LMKEVMEDEGVPTFSKVHELIRPVVENLNELPSCSRSQGEINEVLGSPKGILLHDEGINNVSCMGFNDCIQEMDPILSPLKGINDYNYTSPKEFQQPLSVDFPPKVLMAQ
AILKTYYRKKVSLPLAIKSNFNADHLESECTQRIVSNKVLESSKDSGEIRFSKSKDFIESSIQIPGVKNHFIRGVACSSSPIAHSSLDSDDESSVSVSSEDSESLHAEED
CVEPFSEDLIGESLASLFPVMKIVSWEGNLRLYLASGISESVPSHASAFVQSKICEDVTAVFFELSNLSESNFLANADLLRCDHLEIGLLAASGSLLVVSFQKAAFCCSA
MHRGAALAAMSYLS