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Lag0010858 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010858
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr1:8062451..8062780
RNA-Seq ExpressionLag0010858
SyntenyLag0010858
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0050789 - regulation of biological process (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW21770.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.3e-1440.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

RVW22719.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.3e-1440.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

RVW27595.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.3e-1440.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

RVW66276.1 putative ribonuclease H protein [Vitis vinifera]9.6e-1540.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        +++D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

RVW75343.1 LINE-1 reverse transcriptase-like [Vitis vinifera]1.3e-1440.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

TrEMBL top hitse value%identityAlignment
A0A438CWL6 Transposon TX1 uncharacterized 149 kDa protein6.1e-1540.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

A0A438G251 Putative ribonuclease H protein4.7e-1540.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        +++D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

A0A438KQT0 Transposon TX1 uncharacterized 149 kDa protein6.1e-1540.54Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL
        ++ D  SR+L +AE   ++ GFR+      ++H+QFA+DTI F  T+ ED  + KS+L    AF  +SG  +NL K+   GIN++H+ +   A   GCK 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILF--TQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKL

Query:  GEWPSSYLGLP
          WP  YLGLP
Subjt:  GEWPSSYLGLP

A0A803P465 Uncharacterized protein2.9e-1742.2Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILFTQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKLGE
        ++ D   R+  KA S G I GF +  E   ++H+QFA+DTI F   E++ S   +L+VVEAF  +SG  INL K++ LGI ++  I+   A + GC++G 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILFTQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKLGE

Query:  WPSSYLGLP
        WP  YLG+P
Subjt:  WPSSYLGLP

A0A803QI00 Uncharacterized protein4.2e-1636.7Show/hide
Query:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILFTQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKLGE
        +++D   RL+ KA       GF++  +   I+H+QFA+DT+ F   +D++S + ++++VEAF  +SG  +NL+K++ LGI++E  ++   A   GC++G 
Subjt:  MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILFTQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKLGE

Query:  WPSSYLGLP
        WP +YLG+P
Subjt:  WPSSYLGLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTATGGATAGCTTTAGTCGATTGCTCACCAAAGCTGAATCCGACGGGCTCATTAGAGGTTTCAGAATTGATTCAGAATACCCCAGCATCAACCACATTCAATTCGC
CGAAGACACCATTTTATTCACTCAGTTTGAAGATGATTCATCAGCAAAATCCATGCTCAAAGTGGTGGAGGCTTTTGAAACAGTTTCTGGTCATAACATTAATCTTCATA
AAACTGAGTTTCTGGGCATAAATGTGGAGCATAGTATTCTGGAGACCTTTGCTCATCAATCTGGATGCAAATTGGGAGAGTGGCCTAGTTCATACTTGGGTCTGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTATGGATAGCTTTAGTCGATTGCTCACCAAAGCTGAATCCGACGGGCTCATTAGAGGTTTCAGAATTGATTCAGAATACCCCAGCATCAACCACATTCAATTCGC
CGAAGACACCATTTTATTCACTCAGTTTGAAGATGATTCATCAGCAAAATCCATGCTCAAAGTGGTGGAGGCTTTTGAAACAGTTTCTGGTCATAACATTAATCTTCATA
AAACTGAGTTTCTGGGCATAAATGTGGAGCATAGTATTCTGGAGACCTTTGCTCATCAATCTGGATGCAAATTGGGAGAGTGGCCTAGTTCATACTTGGGTCTGCCTTAA
Protein sequenceShow/hide protein sequence
MIMDSFSRLLTKAESDGLIRGFRIDSEYPSINHIQFAEDTILFTQFEDDSSAKSMLKVVEAFETVSGHNINLHKTEFLGINVEHSILETFAHQSGCKLGEWPSSYLGLP