; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0010863 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010863
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr1:8080896..8081270
RNA-Seq ExpressionLag0010863
SyntenyLag0010863
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]9.0e-1743.9Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S GSKRKR      + E+++S T+    QLK+I +W KEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLLHKH
        IE F SIP  LKLEYC +LL  +
Subjt:  IESFFSIPAALKLEYCELLLHKH

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.8e-1543.33Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S GSKRK+        E++ S  +    QLK+IA W KEKRATE + R +++  L ++PEL +R R KL+ ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLL
        IE F SIP   KLEYC +LL
Subjt:  IESFFSIPAALKLEYCELLL

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]1.1e-1445.76Show/hide
Query:  DDEPRGTLGSRSCSPGRS-SRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKAIE
        D  P   LG+R  S GR+ S GSKRK  G      +++++  +    QLK+IA WSKEKRATE +   ++V  L ++ EL  R RVKLM I+F+ +  IE
Subjt:  DDEPRGTLGSRSCSPGRS-SRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKAIE

Query:  SFFSIPAALKLEYCELLL
         F S P  LKLEYC +LL
Subjt:  SFFSIPAALKLEYCELLL

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.1e-1443.33Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S  SKRKR        E++ S      +QLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLL
        IE F SIP  LKLEYC +LL
Subjt:  IESFFSIPAALKLEYCELLL

XP_038899283.1 uncharacterized protein LOC120086622 [Benincasa hispida]3.4e-1643.9Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTS----FTKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        ++S DE  GT          S RGSKRK  G  + + ++  +       QLKSIAEWSK++ ATE + R K+V  L ++P+L  ++++K M+I+F N+  
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTS----FTKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLLHKH
         ESF SIPA +KLEYCELLL  H
Subjt:  IESFFSIPAALKLEYCELLLHKH

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein5.3e-1545.76Show/hide
Query:  DDEPRGTLGSRSCSPGRS-SRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKAIE
        D  P   LG+R  S GR+ S GSKRK  G      +++++  +    QLK+IA WSKEKRATE +   ++V  L ++ EL  R RVKLM I+F+ +  IE
Subjt:  DDEPRGTLGSRSCSPGRS-SRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKAIE

Query:  SFFSIPAALKLEYCELLL
         F S P  LKLEYC +LL
Subjt:  SFFSIPAALKLEYCELLL

A0A1S3B4L3 uncharacterized protein LOC1034859535.3e-1543.33Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S  SKRKR        E++ S      +QLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLL
        IE F SIP  LKLEYC +LL
Subjt:  IESFFSIPAALKLEYCELLL

A0A5A7SQU2 Putative nuclease HARBI11.8e-1543.33Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S GSKRK+        E++ S  +    QLK+IA W KEKRATE + R +++  L ++PEL +R R KL+ ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLL
        IE F SIP   KLEYC +LL
Subjt:  IESFFSIPAALKLEYCELLL

A0A5A7U0H7 Retrotransposon protein5.3e-1543.33Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S  SKRKR        E++ S      +QLK+IA+W KEKRA E + R ++V  L ++P+L ++ R KLM ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSF----TKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLL
        IE F SIP  LKLEYC +LL
Subjt:  IESFFSIPAALKLEYCELLL

A0A5D3BZU3 Retrotransposon protein4.3e-1743.9Show/hide
Query:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA
        +MS DE  G    ++      S GSKRKR      + E+++S T+    QLK+I +W KEKRATE + R ++V  L ++P+L ++ R KLM ILF +++A
Subjt:  NMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTK----QLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKA

Query:  IESFFSIPAALKLEYCELLLHKH
        IE F SIP  LKLEYC +LL  +
Subjt:  IESFFSIPAALKLEYCELLLHKH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACTGCGAACATGTCAGATGATGAACCTCGGGGTACGCTAGGCAGTCGAAGTTGCTCACCTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGGTCTGGGTCTGA
CACGCACATAGCAGAAATTGTCACCTCGTTTACAAAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTTCGAGATAAAATTGTCA
CCCACTTGATGGAGGTACCGGAATTGGATAACCGAAAAAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGATAGAGAGCTTCTTCTCCATTCCGGCTGCT
CTGAAGTTGGAGTACTGTGAACTCCTCCTGCACAAACACGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTACTGCGAACATGTCAGATGATGAACCTCGGGGTACGCTAGGCAGTCGAAGTTGCTCACCTGGAAGGTCGTCACGTGGGAGCAAGAGGAAGAGGTCTGGGTCTGA
CACGCACATAGCAGAAATTGTCACCTCGTTTACAAAGCAACTGAAGTCAATTGCAGAGTGGTCGAAAGAAAAACGTGCCACAGAGGCTGACTTTCGAGATAAAATTGTCA
CCCACTTGATGGAGGTACCGGAATTGGATAACCGAAAAAGGGTCAAGCTCATGGATATCCTTTTCAATAACATGAAAGCGATAGAGAGCTTCTTCTCCATTCCGGCTGCT
CTGAAGTTGGAGTACTGTGAACTCCTCCTGCACAAACACGGCTGA
Protein sequenceShow/hide protein sequence
MPTANMSDDEPRGTLGSRSCSPGRSSRGSKRKRSGSDTHIAEIVTSFTKQLKSIAEWSKEKRATEADFRDKIVTHLMEVPELDNRKRVKLMDILFNNMKAIESFFSIPAA
LKLEYCELLLHKHG