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Lag0010867 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010867
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:8101880..8109343
RNA-Seq ExpressionLag0010867
SyntenyLag0010867
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.5e-1170.83Show/hide
Query:  RIRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        R+RDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  RIRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]3.3e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0757.38Show/hide
Query:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        P+T  L      K   GHI S+      IRDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE

TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-1172.34Show/hide
Query:  IRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        IRDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  IRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-0757.38Show/hide
Query:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        P+T  L      K   GHI S+      IRDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE

TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.7e-1170.83Show/hide
Query:  RIRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        R+RDCPLICTGESG   DSI L F GQDR+GSWE + TRWN LLP  R
Subjt:  RIRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

A0A5A7U202 Reverse transcriptase6.6e-0857.38Show/hide
Query:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        P+T  L      K   GHI S+      IRDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE

A0A5A7U2P4 Integrase catalytic domain-containing protein1.6e-0971.11Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSLLP  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

A0A5D3C3J6 Gag/pol protein5.8e-1272.34Show/hide
Query:  IRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR
        IRDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS +P  R
Subjt:  IRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLLPDIR

A0A5D3CBX3 Reverse transcriptase6.6e-0857.38Show/hide
Query:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        P+T  L      K   GHI S+      IRDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  PYTNALDHCVGIKYKVGHIHSV----TRIRDCPLICTGESGLFADSISLPFWGQDRVGSWE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTTGATGCTTAGAAGTGTTTTATGCTTAGCAGCGGCGGCACGGTGGCGGTACGGCAGTGGCGGCGGCGACAGTGGTGGCGGCAACGGCGGTACAGCAGTGAGTGG
CGGCATCGGTACGGCGGTGAGTGGCGGGCGGTACGGTGGATACCCCCACAAGCATGTTCCCTACACGAACGCTTTGGATCATTGTGTTGGTATCAAATACAAAGTGGGTC
ATATTCATAGTGTTACCAGGATAAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGG
AGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGATAAGTAGAGGTCCATCAGGTCCCATCGATAGCTCTATAAGGGCGTTGAGCAAAGAAGA
GGAGTTCTTGGCTGCTGTTTTTTCTGTGGAACCGAAGGATTTTGGTGAAAACTCGTCAAGAAAACTTCAAGGGAAAACAGAGGAAAGCTGGAATATACCCAGAAATGTGA
TTGGGCTACCTACCAGCATCTATTCTGTGGCTCCTCAACCACTCCCCACACTATATAAGCTCGTGATTCGAAGTCAAATTCAAGCAGAACTCAATGGGAAAAAGTGGGTG
GTGACAGAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTTGATGCTTAGAAGTGTTTTATGCTTAGCAGCGGCGGCACGGTGGCGGTACGGCAGTGGCGGCGGCGACAGTGGTGGCGGCAACGGCGGTACAGCAGTGAGTGG
CGGCATCGGTACGGCGGTGAGTGGCGGGCGGTACGGTGGATACCCCCACAAGCATGTTCCCTACACGAACGCTTTGGATCATTGTGTTGGTATCAAATACAAAGTGGGTC
ATATTCATAGTGTTACCAGGATAAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCTGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGG
AGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCCGATATTAGGATAAGTAGAGGTCCATCAGGTCCCATCGATAGCTCTATAAGGGCGTTGAGCAAAGAAGA
GGAGTTCTTGGCTGCTGTTTTTTCTGTGGAACCGAAGGATTTTGGTGAAAACTCGTCAAGAAAACTTCAAGGGAAAACAGAGGAAAGCTGGAATATACCCAGAAATGTGA
TTGGGCTACCTACCAGCATCTATTCTGTGGCTCCTCAACCACTCCCCACACTATATAAGCTCGTGATTCGAAGTCAAATTCAAGCAGAACTCAATGGGAAAAAGTGGGTG
GTGACAGAACCCTAG
Protein sequenceShow/hide protein sequence
MELMLRSVLCLAAAARWRYGSGGGDSGGGNGGTAVSGGIGTAVSGGRYGGYPHKHVPYTNALDHCVGIKYKVGHIHSVTRIRDCPLICTGESGLFADSISLPFWGQDRVG
SWERSLTRWNSLLPDIRISRGPSGPIDSSIRALSKEEEFLAAVFSVEPKDFGENSSRKLQGKTEESWNIPRNVIGLPTSIYSVAPQPLPTLYKLVIRSQIQAELNGKKWV
VTEP