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Lag0010871 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010871
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:8292319..8292669
RNA-Seq ExpressionLag0010871
SyntenyLag0010871
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060482.1 uncharacterized protein E6C27_scaffold22G003150 [Cucumis melo var. makuwa]6.6e-2254.24Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV
        MS +   GK   +RLVE+EEQ+LYL EVPDS+RY+ESRLDEISEK   IDAV  R++G P+QEL  RV+ LE+        + ERG+SST SV  + ERV
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV

Query:  DELNTSQTTMLRLFNEMT
         EL++SQ T+L + N M+
Subjt:  DELNTSQTTMLRLFNEMT

KAA0065910.1 senescence-specific cysteine protease sag39 [Cucumis melo var. makuwa]1.7e-2256.78Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV
        MS     GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+        + ERGESS+     M ERV
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV

Query:  DELNTSQTTMLRLFNEMT
         EL++SQ  +L + N M+
Subjt:  DELNTSQTTMLRLFNEMT

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]8.3e-3368.1Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT P S ERG+SST+   ++  R+ E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        LN S + M++LFNEMT
Subjt:  LNTSQTTMLRLFNEMT

XP_022154605.1 uncharacterized protein LOC111021829 [Momordica charantia]2.2e-3368.1Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT P S ERG+SST+   ++  R+ E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        LN S +TM++LFNEMT
Subjt:  LNTSQTTMLRLFNEMT

XP_022155185.1 uncharacterized protein LOC111022320 [Momordica charantia]2.8e-2860.34Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K     + ERGESS+SS+  M ERV+E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        ++ S+ T++++ +E+T
Subjt:  LNTSQTTMLRLFNEMT

TrEMBL top hitse value%identityAlignment
A0A5A7UX96 Retrotrans_gag domain-containing protein3.2e-2254.24Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV
        MS +   GK   +RLVE+EEQ+LYL EVPDS+RY+ESRLDEISEK   IDAV  R++G P+QEL  RV+ LE+        + ERG+SST SV  + ERV
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV

Query:  DELNTSQTTMLRLFNEMT
         EL++SQ T+L + N M+
Subjt:  DELNTSQTTMLRLFNEMT

A0A5A7VFC8 Senescence-specific cysteine protease sag398.4e-2356.78Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV
        MS     GK+  +RLVEIEEQ+LYL EVPDS+RY+ESRLDEISEK+  IDAV  RI+GLP+QEL  RVETLE+        + ERGESS+     M ERV
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKAT--NPCSTERGESSTSSVDKMNERV

Query:  DELNTSQTTMLRLFNEMT
         EL++SQ  +L + N M+
Subjt:  DELNTSQTTMLRLFNEMT

A0A6J1D906 Reverse transcriptase4.0e-3368.1Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPD +R +E+R+DE SEK GEIDAVNARIDGLP+Q++A+RVETLESKAT P S ERG+SST+   ++  R+ E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        LN S + M++LFNEMT
Subjt:  LNTSQTTMLRLFNEMT

A0A6J1DK29 uncharacterized protein LOC1110218291.1e-3368.1Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+ K+HV+RLVEIEEQLLYLREVPDS+R +E+R+DE SEK GEIDAVNAR+DGLP+Q++A+RVET ESKAT P S ERG+SST+   ++  R+ E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        LN S +TM++LFNEMT
Subjt:  LNTSQTTMLRLFNEMT

A0A6J1DLQ6 uncharacterized protein LOC1110223201.3e-2860.34Show/hide
Query:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE
        MS TKQ+GK+H++RLVEIEE+LL+LRE+PD++RYVESRLDEIS K   ID VNARIDGL ++EL +RVETLE K     + ERGESS+SS+  M ERV+E
Subjt:  MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDE

Query:  LNTSQTTMLRLFNEMT
        ++ S+ T++++ +E+T
Subjt:  LNTSQTTMLRLFNEMT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATGACCAAACAAATGGGCAAGACCCACGTTGAACGACTCGTCGAGATAGAAGAACAGTTGCTATACCTGAGGGAAGTACCTGACTCGGTACGATATGTCGAAAG
TCGACTTGATGAGATCTCCGAAAAGTTGGGTGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAAACCCTGGAAAGTA
AAGCTACGAACCCTTGTAGCACTGAACGTGGAGAAAGTTCCACGAGTTCCGTCGACAAGATGAACGAGCGGGTCGACGAGTTGAATACATCCCAAACAACCATGTTGCGG
TTGTTCAACGAAATGACATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATGACCAAACAAATGGGCAAGACCCACGTTGAACGACTCGTCGAGATAGAAGAACAGTTGCTATACCTGAGGGAAGTACCTGACTCGGTACGATATGTCGAAAG
TCGACTTGATGAGATCTCCGAAAAGTTGGGTGAGATAGATGCAGTGAATGCCCGAATTGATGGGCTACCTGTACAAGAGTTGGCAATAAGGGTAGAAACCCTGGAAAGTA
AAGCTACGAACCCTTGTAGCACTGAACGTGGAGAAAGTTCCACGAGTTCCGTCGACAAGATGAACGAGCGGGTCGACGAGTTGAATACATCCCAAACAACCATGTTGCGG
TTGTTCAACGAAATGACATAA
Protein sequenceShow/hide protein sequence
MSMTKQMGKTHVERLVEIEEQLLYLREVPDSVRYVESRLDEISEKLGEIDAVNARIDGLPVQELAIRVETLESKATNPCSTERGESSTSSVDKMNERVDELNTSQTTMLR
LFNEMT