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Lag0010883 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0010883
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr1:8623044..8623397
RNA-Seq ExpressionLag0010883
SyntenyLag0010883
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN60807.1 hypothetical protein VITISV_044449 [Vitis vinifera]7.9e-1550.54Show/hide
Query:  IENSKQIPITHIGSS-LISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSS
        + N KQ+ I+H+G++ L SS  P++LH V HTP  +  L+SV +LC DNK  VEFYA+ FL KD  +K  LL+G L++GLYK+ SS +S V S
Subjt:  IENSKQIPITHIGSS-LISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSS

CAN83798.1 hypothetical protein VITISV_039072 [Vitis vinifera]2.0e-1858.76Show/hide
Query:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA
        ++ N KQI I+HIG +L+ SS KPI L+HVLHTP I+K+L+SV RL  DNKA VEFY +FFL KD QTK  LL+G LE GLYKL+    ++ SSS++
Subjt:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA

RVW64597.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]6.1e-1545.54Show/hide
Query:  MIENSKQIPITHIGSSLIS-SSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIAFFQ
        M+ N K+IPI+H G+SL+S SS P+ L+++LH P+++ +++SV++LC DN   VEFY  FFL KD  +K  LL+G L +GLY++S++    +SS    F 
Subjt:  MIENSKQIPITHIGSSLIS-SSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIAFFQ

Query:  F
        F
Subjt:  F

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]2.6e-1858.76Show/hide
Query:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA
        ++ N KQI I+HIG +L+ SS KPI L+HVLHTP I+K+L+SV RL  DNKA VEFY +FFL KD QTK  LL+G LE GLYKL+    ++ SSS++
Subjt:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA

RVX17172.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.7e-1546.28Show/hide
Query:  MIENSKQIPITHIGSSLI-SSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKL-SSSLNS-IVSSSIAF
        M+ N K +PIT +G S + +S+KP +LH+VLH P +T  L+SV++ C DN   +EF+ S F  KD  TK TLL+G LE GLYK  +SS++S   S     
Subjt:  MIENSKQIPITHIGSSLI-SSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKL-SSSLNS-IVSSSIAF

Query:  FQFKLLPV---GIFDWGTLQL
        F  KL P+   GI D  TL L
Subjt:  FQFKLLPV---GIFDWGTLQL

TrEMBL top hitse value%identityAlignment
A0A438FXB1 Retrovirus-related Pol polyprotein from transposon RE12.9e-1545.54Show/hide
Query:  MIENSKQIPITHIGSSLIS-SSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIAFFQ
        M+ N K+IPI+H G+SL+S SS P+ L+++LH P+++ +++SV++LC DN   VEFY  FFL KD  +K  LL+G L +GLY++S++    +SS    F 
Subjt:  MIENSKQIPITHIGSSLIS-SSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIAFFQ

Query:  F
        F
Subjt:  F

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE11.3e-1858.76Show/hide
Query:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA
        ++ N KQI I+HIG +L+ SS KPI L+HVLHTP I+K+L+SV RL  DNKA VEFY +FFL KD QTK  LL+G LE GLYKL+    ++ SSS++
Subjt:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA

A0A438K7J8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-1546.28Show/hide
Query:  MIENSKQIPITHIGSSLI-SSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKL-SSSLNS-IVSSSIAF
        M+ N K +PIT +G S + +S+KP +LH+VLH P +T  L+SV++ C DN   +EF+ S F  KD  TK TLL+G LE GLYK  +SS++S   S     
Subjt:  MIENSKQIPITHIGSSLI-SSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKL-SSSLNS-IVSSSIAF

Query:  FQFKLLPV---GIFDWGTLQL
        F  KL P+   GI D  TL L
Subjt:  FQFKLLPV---GIFDWGTLQL

A5B0S7 Uncharacterized protein3.8e-1550.54Show/hide
Query:  IENSKQIPITHIGSS-LISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSS
        + N KQ+ I+H+G++ L SS  P++LH V HTP  +  L+SV +LC DNK  VEFYA+ FL KD  +K  LL+G L++GLYK+ SS +S V S
Subjt:  IENSKQIPITHIGSS-LISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSS

A5C0U6 Reverse transcriptase Ty1/copia-type domain-containing protein9.7e-1958.76Show/hide
Query:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA
        ++ N KQI I+HIG +L+ SS KPI L+HVLHTP I+K+L+SV RL  DNKA VEFY +FFL KD QTK  LL+G LE GLYKL+    ++ SSS++
Subjt:  MIENSKQIPITHIGSSLISSS-KPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIA

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.3e-1245.78Show/hide
Query:  MIENSKQIPITHIGS-SLISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYK
        M+ +   IPI+H GS SL + S+P+ LH++L+ P+I K L+SV RLC  N  +VEF+ + F  KDL T   LL+G  +D LY+
Subjt:  MIENSKQIPITHIGS-SLISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.8e-1245.16Show/hide
Query:  MIENSKQIPITHIGS-SLISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVS
        MI +   IPITH GS SL +SS+ + L+ VL+ P+I K L+SV RLC  N+ +VEF+ + F  KDL T   LL+G  +D LY+   + +  VS
Subjt:  MIENSKQIPITHIGS-SLISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVS

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGAAAATAGTAAGCAAATCCCTATCACTCACATTGGTTCATCTTTAATTTCTTCTTCAAAACCAATTTTACTCCATCATGTTCTTCACACTCCTTCCATTACAAA
GAGACTACTTAGTGTTGCTCGTTTATGTAGAGATAACAAAGCTAATGTTGAATTTTATGCTTCTTTTTTCCTTGCCAAGGATTTACAAACCAAGACAACTCTTCTCAAGG
GCACACTTGAAGATGGTCTATACAAACTGTCATCTTCCCTCAACTCAATTGTCTCATCTTCTATTGCCTTTTTTCAGTTCAAACTCCTTCCAGTTGGCATCTTCGATTGG
GGCACCCTGCAACTTCAACTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGAAAATAGTAAGCAAATCCCTATCACTCACATTGGTTCATCTTTAATTTCTTCTTCAAAACCAATTTTACTCCATCATGTTCTTCACACTCCTTCCATTACAAA
GAGACTACTTAGTGTTGCTCGTTTATGTAGAGATAACAAAGCTAATGTTGAATTTTATGCTTCTTTTTTCCTTGCCAAGGATTTACAAACCAAGACAACTCTTCTCAAGG
GCACACTTGAAGATGGTCTATACAAACTGTCATCTTCCCTCAACTCAATTGTCTCATCTTCTATTGCCTTTTTTCAGTTCAAACTCCTTCCAGTTGGCATCTTCGATTGG
GGCACCCTGCAACTTCAACTTTGA
Protein sequenceShow/hide protein sequence
MIENSKQIPITHIGSSLISSSKPILLHHVLHTPSITKRLLSVARLCRDNKANVEFYASFFLAKDLQTKTTLLKGTLEDGLYKLSSSLNSIVSSSIAFFQFKLLPVGIFDW
GTLQLQL