; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011009 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011009
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr1:12178022..12180698
RNA-Seq ExpressionLag0011009
SyntenyLag0011009
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035317.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-1457.65Show/hide
Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE
        TR STF+RLS+STSKK RPSTS FDRLK+T+ Q +R++ +L+ K F E N+D K+ S +PSRMKRK SV INT+G++  LL   +
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.7e-1461.73Show/hide
Query:  MSTSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL
        MST  R S F+RLS+STSKK RPSTS FDRLK+T+ Q +R+M + + K F E N+D K+ S +PSRMKRK SV INT+GSL
Subjt:  MSTSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL

KAA0061611.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1460Show/hide
Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE
        TR STF+RLS+STSKK RPSTSVFDRLK+T  Q +R+M +L+ K F E N+D K+ S +PSRMKRK SV INT+G++  LL   +
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.7e-1463.75Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL
        ST  R STF+RLS+STSKK RPSTS FDRLK+T+ Q +R+M  L+ K F E N+D K+ S +PSRMKRK SV INT+GSL
Subjt:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL

TYK16519.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-1462.5Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL
        ST  R S F+RLS+STSKK RPSTS FDRLK+T+ Q KR+M + + K F E N+D K+ S +PSRMKRK SV INT+GSL
Subjt:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL

TrEMBL top hitse value%identityAlignment
A0A5A7T146 Retrotransposon gag protein3.2e-1457.65Show/hide
Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE
        TR STF+RLS+STSKK RPSTS FDRLK+T+ Q +R++ +L+ K F E N+D K+ S +PSRMKRK SV INT+G++  LL   +
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE

A0A5A7V7A0 Retrotransposon gag protein6.5e-1560Show/hide
Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE
        TR STF+RLS+STSKK RPSTSVFDRLK+T  Q +R+M +L+ K F E N+D K+ S +PSRMKRK SV INT+G++  LL   +
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE

A0A5D3C2C8 Retrotransposon gag protein3.2e-1457.65Show/hide
Query:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE
        TR STF+RLS+STSKK RPSTS FDRLK+ + Q +R+M +L+ K F E N+D K+ S +PSRMKRK SV INT+G++  LL   +
Subjt:  TRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFE

A0A5D3CA53 Retrotransposon gag protein3.2e-1462.5Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL
        ST TR STF+RLS+STSKK RPSTS FDRLK+T+ Q +++M +L+ K F E N D K+ S +PSR KRK SV INT+GSL
Subjt:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL

A0A5D3D209 Retrotransposon gag protein2.5e-1462.5Show/hide
Query:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL
        ST  R S F+RLS+STSKK RPSTS FDRLK+T+ Q KR+M + + K F E N+D K+ S +PSRMKRK SV INT+GSL
Subjt:  STSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCA
ATCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGAAAGTTCTCTGTTC
TCATAAATACAGATGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAGGGTCCTTACACTGTACGCAATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCATTGTATC
CTGTTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTATGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTTCC
TCTTCTCTCAATTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCTCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACGCTTCGTTGCAGTTCCTTCTCTCCA
ACTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTACAGTTCCTTCTCTCAAGCTCGAAGGTTCTCACGCTGCTTC
GCTGTGGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTATGTTGTTGCGTTGTTCCTTCTCC
AAGTTGGAAGGTTCTTCATTGTATGTTGCTGTGTTGTTCCTTCTCCAAGTGCGAAGGTTCTTCGTTGTATGCTGTTGCGTTGTTCCTTCTCAAAGTTCGAAGGTTCTTCG
TTGTATCCTACAGCGTTCTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCAT
TGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAACTTTGCTGGAGTTCCTTCTCCCCAAGTTGAAGTTCCTTCTCTCCAAGGTCGAAAGTTCTCACGCGCTGCGTT
GCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACACGCTTCGCTGCTGTTCCTTCCTCCAAGTTCGAAG
GTTCTCCGCTGCTGCAGTTCATTCTTTCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATGCTTCGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTTTCACGCGCTTCGTTGCAATTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCAC
GTGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTGACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGT
TCGAAGGTTCTCACATCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTCCGTTGCAGTTCCTTCTCTCCAAGGT
CGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTC
ACGTCGCTTCGCTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGGTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCT
GCGCTACTTCCTAAAGTTCAAAGACGTCAATTGTCCTCAGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCAACATTCGGTTGCACTGCTGCGCTACTTTCT
AAAGTCCAAAGACGTCAATTGTCCTTGTACTCATGCTGAAGGCGTGCCGGGGACACAAGTCCAAGGACATTTCCCAAAGCAAGGAACATGTCCCTGTACTCATGCTGAAA
GGCGTGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGAAAGGAACATGTCCCTGTACTCATGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGACCTTCAACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGGTCA
ATCTAAAAGAAAGATGGATAACTTGGAGATGAAACTTTTTGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGAAAGTTCTCTGTTC
TCATAAATACAGATGGTTCCTTGAAGTTCCTTCTCTCCAAGTTTGAGGGTCCTTACACTGTACGCAATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCATTGTATC
CTGTTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTATGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTTCC
TCTTCTCTCAATTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCTCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACGCTTCGTTGCAGTTCCTTCTCTCCA
ACTTCGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGCTACAGTTCCTTCTCTCAAGCTCGAAGGTTCTCACGCTGCTTC
GCTGTGGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTATGTTGTTGCGTTGTTCCTTCTCC
AAGTTGGAAGGTTCTTCATTGTATGTTGCTGTGTTGTTCCTTCTCCAAGTGCGAAGGTTCTTCGTTGTATGCTGTTGCGTTGTTCCTTCTCAAAGTTCGAAGGTTCTTCG
TTGTATCCTACAGCGTTCTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTACTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTGCGTTGTTGCAT
TGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAACTTTGCTGGAGTTCCTTCTCCCCAAGTTGAAGTTCCTTCTCTCCAAGGTCGAAAGTTCTCACGCGCTGCGTT
GCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACACACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACACGCTTCGCTGCTGTTCCTTCCTCCAAGTTCGAAG
GTTCTCCGCTGCTGCAGTTCATTCTTTCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACATGCTTCGCTGCAGTTCCTT
CCTCCAAGTTCGAAGGTTTTCACGCGCTTCGTTGCAATTCCTTCCTCCAAGTTTGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTCTCCAAATTCGAAGGTTCTCAC
GTGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGTTTTGACGCGCTTCACTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGCTGCAGTTCATTCTTCCAAGT
TCGAAGGTTCTCACATCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACTCGCTCCGTTGCAGTTCCTTCTCTCCAAGGT
CGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGTGCTTCGCTGC
AGTTCCTTCCTCCAAGTTTGAAGGTTTTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCAAAGGTTCTC
ACGTCGCTTCGCTACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGGTGCAGTTCCTTCCTCCAAGTTCGAAGGTCCTCATGCTACGCTCGGCTGCACTGCT
GCGCTACTTCCTAAAGTTCAAAGACGTCAATTGTCCTCAGCTGCGCTGCTTCCTTCTCCAAGTTCGAAGGTCCTCATGCAACATTCGGTTGCACTGCTGCGCTACTTTCT
AAAGTCCAAAGACGTCAATTGTCCTTGTACTCATGCTGAAGGCGTGCCGGGGACACAAGTCCAAGGACATTTCCCAAAGCAAGGAACATGTCCCTGTACTCATGCTGAAA
GGCGTGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGAAAGGAACATGTCCCTGTACTCATGCTGA
Protein sequenceShow/hide protein sequence
MSTSTRPSTFQRLSVSTSKKSRPSTSVFDRLKVTSGQSKRKMDNLEMKLFDEVNNDKKLQSSIPSRMKRKFSVLINTDGSLKFLLSKFEGPYTVRNCVVPSPSSKVLHCI
LLRCSFSKFEGSQLYDCYVVPPPSAKDLMWCVVALFPLLSIPSLQGRRFSRSALQFFLPKFEGSHASLQFLLSNFEGSHAFRCSSFSPSLKVDALRYSSFSQARRFSRCF
AVVPSPQVRRFSRASLQFLLSKFEGPYTVCCCVVPSPSWKVLHCMLLCCSFSKCEGSSLYAVALFLLKVRRFFVVSYSVLPSPSSRVLSCTTTTLFLLQVRRILCGALLH
CSLFSQVRWFSRNFAGVPSPQVEVPSLQGRKFSRAALQFFLPKFEGSHTSLQFLLPNSKVLTRFAAVPSSKFEGSPLLQFILSSSKVLTLLRCSSFLQVRRFSHASLQFL
PPSSKVFTRFVAIPSSKFEGSHALRCSSFSPNSKVLTCFAAVPSSKFEGFDALHCSSFLQVRRFSTAAVHSSKFEGSHIASLQFLPPSSKFLPPSSKVLTRSVAVPSLQG
RRFSRAALQFFLPKFEGSRTSLQFLLPNSKVLTCFAAVPSSKFEGFHALRCSSFLQVRRFSAAAVHSSKFKGSHVASLQFLPPSSKVLTCFGAVPSSKFEGPHATLGCTA
ALLPKVQRRQLSSAALLPSPSSKVLMQHSVALLRYFLKSKDVNCPCTHAEGVPGTQVQGHFPKQGTCPCTHAERRGGDTSPRTCPKERNMSLYSC