; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011021 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011021
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:12328555..12329205
RNA-Seq ExpressionLag0011021
SyntenyLag0011021
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.5e-4752.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI   GNKIS VKL++D FL+WK QI  AL  +DL  F++ +  PP K + S E  +       NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        AKEIW  L  IF+SR  AQ M+ K KL  ++KGSMPL EYF +I +C+DALA++ K + ++DHI+YILAGLG +Y+SM+S +
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]5.1e-4449.73Show/hide
Query:  NLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIP---SAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIY
        N    I   GNKIS VKLS+DNFL+WK QI  AL  +DL  F + ++ PP K +    S+   A +  NP+Y  WK+ + LIS WLLGSM++ IL Q+++
Subjt:  NLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIP---SAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIY

Query:  CKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        CK+AKEIW  L  IF+SR  AQ M+ K KL  ++KGSM L EYF +I++C+DALA++ K + ++DHI+YIL GLG +Y+SM+S +
Subjt:  CKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]4.7e-4551.34Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI    NKIS VKLS+DNFL+WK QI  AL  +DL  F++ +  PP K +    S+   A +  NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSALYILSE
        AKEIW  L  IF+SR  AQ M+ K KL  ++K SMPL EYF +I+  +DALA++ K + ++DHI+YILAGLG +Y+SM+S ++  +E
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSALYILSE
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]8.5e-4752.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI   GNKIS VKL++D FL+WK QI  AL  +DL  F++ +  PP K + S E  +       NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        AKEIW  L  IF+SR  AQ M+ K KL  ++KGSMPL EYF +I +C+DALA++ K + ++DHI+YILAGLG +Y+SM+S +
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]3.0e-4450.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI    NKIS VKLS+DNFL+WK QI  AL  +DL  F++ +  PP K +    S+   A +  NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSA-------LY-ILSEYFLLT
        AKEIW  L  IF+SR  AQ M+ K KL  ++K SMPL EYF +I+  +DALA++ K + ++DHI+YILAGLG +Y+SM+S        LY  L  Y+LL 
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSA-------LY-ILSEYFLLT

Query:  N
        N
Subjt:  N
TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-4752.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI   GNKIS VKL++D FL+WK QI  AL  +DL  F++ +  PP K + S E  +       NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        AKEIW  L  IF+SR  AQ M+ K KL  ++KGSMPL EYF +I +C+DALA++ K + ++DHI+YILAGLG +Y+SM+S +
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
A0A5A7UB21 Keratin, type II cytoskeletal 1-like2.5e-4449.73Show/hide
Query:  NLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIP---SAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIY
        N    I   GNKIS VKLS+DNFL+WK QI  AL  +DL  F + ++ PP K +    S+   A +  NP+Y  WK+ + LIS WLLGSM++ IL Q+++
Subjt:  NLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIP---SAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIY

Query:  CKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        CK+AKEIW  L  IF+SR  AQ M+ K KL  ++KGSM L EYF +I++C+DALA++ K + ++DHI+YIL GLG +Y+SM+S +
Subjt:  CKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like2.3e-4551.34Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI    NKIS VKLS+DNFL+WK QI  AL  +DL  F++ +  PP K +    S+   A +  NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSALYILSE
        AKEIW  L  IF+SR  AQ M+ K KL  ++K SMPL EYF +I+  +DALA++ K + ++DHI+YILAGLG +Y+SM+S ++  +E
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSALYILSE
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-944.1e-4752.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI   GNKIS VKL++D FL+WK QI  AL  +DL  F++ +  PP K + S E  +       NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKN---NPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
        AKEIW  L  IF+SR  AQ M+ K KL  ++KGSMPL EYF +I +C+DALA++ K + ++DHI+YILAGLG +Y+SM+S +
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
A0A5D3D5T2 Keratin, type II cytoskeletal 1-like1.5e-4450.75Show/hide
Query:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT
        NQI    NKIS VKLS+DNFL+WK QI  AL  +DL  F++ +  PP K +    S+   A +  NP Y  WK+QD LISSWLLGSM++ IL Q+++CK+
Subjt:  NQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLI---PSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKT

Query:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSA-------LY-ILSEYFLLT
        AKEIW  L  IF+SR  AQ M+ K KL  ++K SMPL EYF +I+  +DALA++ K + ++DHI+YILAGLG +Y+SM+S        LY  L  Y+LL 
Subjt:  AKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSA-------LY-ILSEYFLLT

Query:  N
        N
Subjt:  N
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.7e-2129.83Show/hide
Query:  LSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKTA
        L+N  +   N  +  KL++ N+L+W  Q+    +G++L  F+D     PP  I +   P V   NPDY +WK+QD LI S +LG+++ S+   V    TA
Subjt:  LSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKTA

Query:  KEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
         +IW  L  I+ + +   + +++T+L+   KG+  +++Y   +    D LA +GK +D ++ +  +L  L  EY+ ++  +
Subjt:  KEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.8e-1427.27Show/hide
Query:  AEDSGNLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQV
        AE+   ++  I+N  N  +  KL++ N+L+W  Q+    +G++L  F+D     PP  I +    AV + NPDY +W++QD LI S +LG+++ S+   V
Subjt:  AEDSGNLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQV

Query:  IYCKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
            TA +IW  L  I+ + +   +    T+L+ + +                D LA +GK +D ++ +  +L  L  +Y+ ++  +
Subjt:  IYCKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
Arabidopsis top hitse value%identityAlignment
AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).4.2e-1229.85Show/hide
Query:  ISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKTAKEIWRCLLLIF
        I  +    DN++ WK++    L       FID   +P P       DP     +P Y  W++ ++++  WL+ SMTD +LE V+Y +TA ++W  L  +F
Subjt:  ISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCKTAKEIWRCLLLIF

Query:  NSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKK
              +I +++ +L TL++G   + EYF ++ K
Subjt:  NSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKK
AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)9.4e-1225.29Show/hide
Query:  TVKLSNDNFLVWKVQIE-----FALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCK-TAKEIWRCL
        T+ L+  N+ VW+   E     F + GH     ID    P P                   +WK++D L+  W+ G++TDS+L+ +I    TA+++W  L
Subjt:  TVKLSNDNFLVWKVQIE-----FALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQVIYCK-TAKEIWRCL

Query:  LLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL
          +F     A+ ++ + +L+T     + ++EY  ++K   D L  V   I     +M++L GL  +Y+ +++ +
Subjt:  LLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSAL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAATCAAATGCGGAGATTCAGGTTGCCGAAGATTCCGGAAATTTGTCGAATCAGATCGTAAATCCGGGTAATAAAATCTCCACTGTTAAGCTGAGTAATGATAA
TTTTCTTGTATGGAAAGTGCAAATTGAATTTGCCCTAAATGGTCATGATCTCGGAGAATTCATTGATAAAGATGTTGTTCCTCCTCCTAAACTAATTCCGTCGGCTGAAG
ATCCTGCGGTTAAGAAGAATAATCCTGATTATGCAAAGTGGAAGAAACAAGATAGTTTAATATCATCTTGGCTGTTAGGTTCGATGACTGATAGTATACTCGAACAAGTA
ATATATTGTAAAACTGCAAAGGAGATCTGGAGATGTCTTCTTCTGATTTTTAATTCTAGAAATAGAGCACAAATCATGAGAATGAAAACCAAACTGCAGACTTTACAAAA
AGGATCAATGCCATTGAATGAATATTTTGCCCAAATAAAGAAATGTATTGATGCACTGGCTGCTGTAGGGAAGGAAATCGATACTGAAGATCATATTATGTATATCCTTG
CTGGTTTAGGCCCTGAATACGAGTCTATGGTGTCTGCCTTGTATATTCTAAGCGAATATTTTCTACTAACAAATACTTATCCATTCAACATGCAATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCAATCAAATGCGGAGATTCAGGTTGCCGAAGATTCCGGAAATTTGTCGAATCAGATCGTAAATCCGGGTAATAAAATCTCCACTGTTAAGCTGAGTAATGATAA
TTTTCTTGTATGGAAAGTGCAAATTGAATTTGCCCTAAATGGTCATGATCTCGGAGAATTCATTGATAAAGATGTTGTTCCTCCTCCTAAACTAATTCCGTCGGCTGAAG
ATCCTGCGGTTAAGAAGAATAATCCTGATTATGCAAAGTGGAAGAAACAAGATAGTTTAATATCATCTTGGCTGTTAGGTTCGATGACTGATAGTATACTCGAACAAGTA
ATATATTGTAAAACTGCAAAGGAGATCTGGAGATGTCTTCTTCTGATTTTTAATTCTAGAAATAGAGCACAAATCATGAGAATGAAAACCAAACTGCAGACTTTACAAAA
AGGATCAATGCCATTGAATGAATATTTTGCCCAAATAAAGAAATGTATTGATGCACTGGCTGCTGTAGGGAAGGAAATCGATACTGAAGATCATATTATGTATATCCTTG
CTGGTTTAGGCCCTGAATACGAGTCTATGGTGTCTGCCTTGTATATTCTAAGCGAATATTTTCTACTAACAAATACTTATCCATTCAACATGCAATTCTAA
Protein sequenceShow/hide protein sequence
MDQSNAEIQVAEDSGNLSNQIVNPGNKISTVKLSNDNFLVWKVQIEFALNGHDLGEFIDKDVVPPPKLIPSAEDPAVKKNNPDYAKWKKQDSLISSWLLGSMTDSILEQV
IYCKTAKEIWRCLLLIFNSRNRAQIMRMKTKLQTLQKGSMPLNEYFAQIKKCIDALAAVGKEIDTEDHIMYILAGLGPEYESMVSALYILSEYFLLTNTYPFNMQF