; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011066 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011066
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr1:13563687..13564337
RNA-Seq ExpressionLag0011066
SyntenyLag0011066
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN73380.1 hypothetical protein VITISV_032547 [Vitis vinifera]1.1e-0844.07Show/hide
Query:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDG--LSTSKTSVSRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSK
        M +I+  NTASEIW AL     S + A +  L  QLQ +KK       S    S P F    +   + F  SIL +PQ  P  + WP   +  +  N SK
Subjt:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDG--LSTSKTSVSRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSK

Query:  PQCQICGKFGHTALICHH
        P+CQICGKFGHTALICHH
Subjt:  PQCQICGKFGHTALICHH

CAN79393.1 hypothetical protein VITISV_010428 [Vitis vinifera]1.1e-0558.06Show/hide
Query:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH
        PF  +T  S +Q +IL KPQ    QP P+W     HFS QN  KPQCQICGKFGH ALIC H
Subjt:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH

RVW77188.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.1e-0558.06Show/hide
Query:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH
        PF  +T  S +Q +IL KPQ    QP P+W     HFS QN  KPQCQICGKFGH ALIC H
Subjt:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH

XP_022155181.1 uncharacterized protein LOC111022315 [Momordica charantia]2.1e-0427.36Show/hide
Query:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDGLSTSK----------------------------------------TSVSR-------
        MGE+V+L T  +IW++L    DS TTA IMGL+ +LQ ++KDG S S+                                        TS+         
Subjt:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDGLSTSK----------------------------------------TSVSR-------

Query:  -------------------------------------------PAFPFSS-------STPLSNFQS-SILSKPQQPSPKWPSSSQHFSKQNHSKPQCQIC
                                                   P F F +       ++P+S  QS SIL KPQ    KWP       K + SK QCQIC
Subjt:  -------------------------------------------PAFPFSS-------STPLSNFQS-SILSKPQQPSPKWPSSSQHFSKQNHSKPQCQIC

Query:  GKFGHTALICHH
        GK GH+A +C+H
Subjt:  GKFGHTALICHH

TrEMBL top hitse value%identityAlignment
A0A438FXB1 Retrovirus-related Pol polyprotein from transposon RE18.6e-0450.77Show/hide
Query:  SRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSKPQCQICGKFGHTALICHH
        S P F    +   + F  SILS+PQ  P  + WP   +  +  N SKP+CQICGKFGHTALICHH
Subjt:  SRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSKPQCQICGKFGHTALICHH

A0A438GYC1 Retrovirus-related Pol polyprotein from transposon RE15.4e-0658.06Show/hide
Query:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH
        PF  +T  S +Q +IL KPQ    QP P+W     HFS QN  KPQCQICGKFGH ALIC H
Subjt:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH

A5AG90 Uncharacterized protein5.2e-0944.07Show/hide
Query:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDG--LSTSKTSVSRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSK
        M +I+  NTASEIW AL     S + A +  L  QLQ +KK       S    S P F    +   + F  SIL +PQ  P  + WP   +  +  N SK
Subjt:  MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDG--LSTSKTSVSRPAFPFSSSTPLSNFQSSILSKPQ-QPSPK-WPSSSQHFSKQNHSK

Query:  PQCQICGKFGHTALICHH
        P+CQICGKFGHTALICHH
Subjt:  PQCQICGKFGHTALICHH

A5BWU6 Reverse transcriptase Ty1/copia-type domain-containing protein5.4e-0658.06Show/hide
Query:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH
        PF  +T  S +Q +IL KPQ    QP P+W     HFS QN  KPQCQICGKFGH ALIC H
Subjt:  PFSSSTPLSNFQSSILSKPQ----QPSPKWPSSSQHFSKQNHSKPQCQICGKFGHTALICHH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGATTGTTAATCTGAATACTGCATCTGAAATTTGGAATGCTTTAAAATGCTATGATGATTCTAATACAACTGCTCACATCATGGGTTTGGAGGCTCAG
TTACAACAAATTAAAAAGGATGGTCTATCGACCTCTAAAACCTCTGTTTCTCGTCCCGCTTTTCCATTCTCATCTTCTACTCCTCTTTCTAATTTTCAATCAAGC
ATTCTCAGTAAGCCGCAACAGCCTTCTCCTAAATGGCCCTCTTCCTCGCAACATTTTTCTAAACAAAATCACTCCAAGCCTCAATGCCAGATATGTGGTAAGTTT
GGCCACACTGCACTTATTTGCCATCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGATTGTTAATCTGAATACTGCATCTGAAATTTGGAATGCTTTAAAATGCTATGATGATTCTAATACAACTGCTCACATCATGGGTTTGGAGGCTCAG
TTACAACAAATTAAAAAGGATGGTCTATCGACCTCTAAAACCTCTGTTTCTCGTCCCGCTTTTCCATTCTCATCTTCTACTCCTCTTTCTAATTTTCAATCAAGC
ATTCTCAGTAAGCCGCAACAGCCTTCTCCTAAATGGCCCTCTTCCTCGCAACATTTTTCTAAACAAAATCACTCCAAGCCTCAATGCCAGATATGTGGTAAGTTT
GGCCACACTGCACTTATTTGCCATCACTGA
Protein sequenceShow/hide protein sequence
MGEIVNLNTASEIWNALKCYDDSNTTAHIMGLEAQLQQIKKDGLSTSKTSVSRPAFPFSSSTPLSNFQSSILSKPQQPSPKWPSSSQHFSKQNHSKPQCQICGKF
GHTALICHH