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Lag0011070 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011070
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr1:13693898..13695113
RNA-Seq ExpressionLag0011070
SyntenyLag0011070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF2294851.1 hypothetical protein GH714_022648 [Hevea brasiliensis]1.8e-0732.18Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAIL--------------------KISAYVEFLKTWYEGKEKSSSK------------
        +ET    QNL NQI+QLA  VS++  + SGKLP  P   PK NA                      K++  V+  K   + KE+   K            
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAIL--------------------KISAYVEFLKTWYEGKEKSSSK------------

Query:  ------EEVSENVNVLLSDTP------NPDHHPSSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFD
              E+V   VN L+  T         ++  ++A ILLGRPF++T+KT IDV +G +S  F  + L+F IF+
Subjt:  ------EEVSENVNVLLSDTP------NPDHHPSSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFD

XP_022156327.1 uncharacterized protein LOC111023248 [Momordica charantia]7.9e-0841.96Show/hide
Query:  TNRGRSYSSKIK----FRLPLLQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAY-------VEFLKTWYEGKEKSSSKEEV
        +N G S    +K      L   QETR  +QNLGNQITQLAT +SR++ +SSG LP Q EVNPK N + KISA        +  +    +  E S  K+E 
Subjt:  TNRGRSYSSKIK----FRLPLLQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAY-------VEFLKTWYEGKEKSSSKEEV

Query:  SENVNVLLSDTP
        S NV+  ++  P
Subjt:  SENVNVLLSDTP

XP_027088481.1 uncharacterized protein LOC113709825 [Coffea arabica]1.8e-0724.5Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------
        Q T + +Q++ NQI+Q+AT ++R+D+++ GKLP QPE+NPK                                                           
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------

Query:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI
                                       +AI ++  YV+FL+     + +    E   V ENV+ +L     P               DH P  + +
Subjt:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI

Query:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSI
        LLGRPFM TA+T IDV++G +S  F  +T++F IFD ++   N + SS+
Subjt:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSI

XP_027118762.1 uncharacterized protein LOC113736005 [Coffea arabica]3.0e-0724.32Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------
        Q T + IQ++ NQI+Q+AT ++R+D ++ GKLP QPE+NPK                                                           
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------

Query:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI
                                       +AI ++  Y +FL+     + +    E   V ENV+ +L     P               DH P  + +
Subjt:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI

Query:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSIEYYMLEFDPV
        LLGRPFM TA+T IDV++G++S  F  + ++F IFD ++   N + SS+ + +   DPV
Subjt:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSIEYYMLEFDPV

XP_027158344.1 uncharacterized protein LOC113759962 [Coffea eugenioides]7.6e-1133.33Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAYVEFLKTWYEGKEKSSSKEEVSENVNVLLSDTPNPDHHPSSATILLGRPF
        QETR+ ++++  +I+QLAT ++R+++ + GKLP QPEVNP+  + + + +  E      EG +  +SK   S+N  VL       +   + + ILLGRPF
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAYVEFLKTWYEGKEKSSSKEEVSENVNVLLSDTPNPDHHPSSATILLGRPF

Query:  METAKTVIDVDEGVVSGGFQDKTLYFKIFDDIENHHASSIEYYMLEFDPV
        + T +T IDV+E  +S  F  K + F IFD ++    ++  + +   +P+
Subjt:  METAKTVIDVDEGVVSGGFQDKTLYFKIFDDIENHHASSIEYYMLEFDPV

TrEMBL top hitse value%identityAlignment
A0A392NWD2 Uncharacterized protein (Fragment)1.9e-0725.39Show/hide
Query:  LQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAYVEFLKTWYEGKEKSSSKEEVSENVNVLLSDTPNPDHHP----------
        +Q T   I +L  Q+ QLAT +++M  + SG LP Q   NP  +AI   S             + S +K+++++N       TP P   P          
Subjt:  LQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAYVEFLKTWYEGKEKSSSKEEVSENVNVLLSDTPNPDHHP----------

Query:  -------------------------SSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIENHHASSIEYYMLEFDP-VNDRASN
                                 +  T++LGRPFM T++T +DV  G +S  F    ++F +FD +++ H     + +  FD  +ND  ++
Subjt:  -------------------------SSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIENHHASSIEYYMLEFDP-VNDRASN

A0A6A6L0L8 Uncharacterized protein8.5e-0832.18Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAIL--------------------KISAYVEFLKTWYEGKEKSSSK------------
        +ET    QNL NQI+QLA  VS++  + SGKLP  P   PK NA                      K++  V+  K   + KE+   K            
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAIL--------------------KISAYVEFLKTWYEGKEKSSSK------------

Query:  ------EEVSENVNVLLSDTP------NPDHHPSSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFD
              E+V   VN L+  T         ++  ++A ILLGRPF++T+KT IDV +G +S  F  + L+F IF+
Subjt:  ------EEVSENVNVLLSDTP------NPDHHPSSATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFD

A0A6J1DRS5 uncharacterized protein LOC1110232483.8e-0841.96Show/hide
Query:  TNRGRSYSSKIK----FRLPLLQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAY-------VEFLKTWYEGKEKSSSKEEV
        +N G S    +K      L   QETR  +QNLGNQITQLAT +SR++ +SSG LP Q EVNPK N + KISA        +  +    +  E S  K+E 
Subjt:  TNRGRSYSSKIK----FRLPLLQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAY-------VEFLKTWYEGKEKSSSKEEV

Query:  SENVNVLLSDTP
        S NV+  ++  P
Subjt:  SENVNVLLSDTP

A0A6P6UE53 uncharacterized protein LOC1137098258.5e-0824.5Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------
        Q T + +Q++ NQI+Q+AT ++R+D+++ GKLP QPE+NPK                                                           
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------

Query:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI
                                       +AI ++  YV+FL+     + +    E   V ENV+ +L     P               DH P  + +
Subjt:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI

Query:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSI
        LLGRPFM TA+T IDV++G +S  F  +T++F IFD ++   N + SS+
Subjt:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSI

A0A6P6WZ49 uncharacterized protein LOC1137360051.5e-0724.32Show/hide
Query:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------
        Q T + IQ++ NQI+Q+AT ++R+D ++ GKLP QPE+NPK                                                           
Subjt:  QETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPK-----------------------------------------------------------

Query:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI
                                       +AI ++  Y +FL+     + +    E   V ENV+ +L     P               DH P  + +
Subjt:  ------------------------------ANAILKISAYVEFLKTWYEGKEKSSSKEE--VSENVNVLLSDTPNP---------------DHHPSSATI

Query:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSIEYYMLEFDPV
        LLGRPFM TA+T IDV++G++S  F  + ++F IFD ++   N + SS+ + +   DPV
Subjt:  LLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIE---NHHASSIEYYMLEFDPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACCAATAGAGGCCGCTCGTATTCAAGCAAAATCAAGTTTCGACTTCCTCTACTTCAGGAAACTAGGAATGTCATCCAAAATTTGGGAAACCAAATAACTCAGTT
GGCAACCCAAGTCAGCAGGATGGATAACAAGAGCTCTGGGAAGCTGCCTGGCCAACCTGAAGTAAACCCAAAGGCGAATGCAATTTTAAAAATCTCAGCCTATGTCGAGT
TCCTCAAAACTTGGTACGAAGGTAAGGAGAAATCCTCAAGTAAGGAAGAGGTTAGCGAGAATGTAAATGTTTTATTGTCAGACACTCCTAATCCTGATCACCATCCATCT
TCTGCGACGATACTTCTTGGTCGTCCTTTTATGGAGACTGCCAAGACAGTCATTGACGTAGATGAAGGAGTTGTATCAGGGGGTTTCCAGGATAAGACTTTGTACTTTAA
AATTTTTGATGATATTGAAAATCATCATGCATCTTCTATTGAGTATTACATGCTTGAGTTTGACCCAGTGAATGATCGTGCGTCTAATTCTAACTCATGCATGGTTACTA
ACAATGAAATGCATTTCTCTATCTCTGTTATTGACAAATCTTGTGGAATCACCAAGTGCTCGCCCTCTAAATTTAGGGCAGAGCGAGTCTTTTGTCAGCCCACTTCTGCT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAACCAATAGAGGCCGCTCGTATTCAAGCAAAATCAAGTTTCGACTTCCTCTACTTCAGGAAACTAGGAATGTCATCCAAAATTTGGGAAACCAAATAACTCAGTT
GGCAACCCAAGTCAGCAGGATGGATAACAAGAGCTCTGGGAAGCTGCCTGGCCAACCTGAAGTAAACCCAAAGGCGAATGCAATTTTAAAAATCTCAGCCTATGTCGAGT
TCCTCAAAACTTGGTACGAAGGTAAGGAGAAATCCTCAAGTAAGGAAGAGGTTAGCGAGAATGTAAATGTTTTATTGTCAGACACTCCTAATCCTGATCACCATCCATCT
TCTGCGACGATACTTCTTGGTCGTCCTTTTATGGAGACTGCCAAGACAGTCATTGACGTAGATGAAGGAGTTGTATCAGGGGGTTTCCAGGATAAGACTTTGTACTTTAA
AATTTTTGATGATATTGAAAATCATCATGCATCTTCTATTGAGTATTACATGCTTGAGTTTGACCCAGTGAATGATCGTGCGTCTAATTCTAACTCATGCATGGTTACTA
ACAATGAAATGCATTTCTCTATCTCTGTTATTGACAAATCTTGTGGAATCACCAAGTGCTCGCCCTCTAAATTTAGGGCAGAGCGAGTCTTTTGTCAGCCCACTTCTGCT
TAA
Protein sequenceShow/hide protein sequence
METNRGRSYSSKIKFRLPLLQETRNVIQNLGNQITQLATQVSRMDNKSSGKLPGQPEVNPKANAILKISAYVEFLKTWYEGKEKSSSKEEVSENVNVLLSDTPNPDHHPS
SATILLGRPFMETAKTVIDVDEGVVSGGFQDKTLYFKIFDDIENHHASSIEYYMLEFDPVNDRASNSNSCMVTNNEMHFSISVIDKSCGITKCSPSKFRAERVFCQPTSA