CuGenDBv2

Gene ID	Lag0011099
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RAB GTPase homolog A5D
Genome location	chr1:14443456..14446151
RNA-Seq Expression	Lag0011099
Synteny	Lag0011099
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0012505 - endomembrane system (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR001806 - Small GTPase IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597626.1 Ras-related protein RABA5d, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

XP_022138202.1 ras-related protein RABA5d [Momordica charantia]

2.6e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

XP_022932589.1 ras-related protein RABA5d-like [Cucurbita moschata]

2.6e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

XP_022972219.1 ras-related protein RABA5d-like [Cucurbita maxima]

2.6e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

XP_022979928.1 ras-related protein RABA5d-like [Cucurbita maxima]

2.6e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KU21 Uncharacterized protein

1.2e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

A0A5A7TS03 Ras-related protein RABA5d

1.2e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

A0A6J1CAE9 ras-related protein RABA5d

1.2e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

A0A6J1I7X8 ras-related protein RABA5d-like

1.2e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

A0A6J1IXQ6 ras-related protein RABA5d-like

1.2e-14

86.54

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFNLHSKATI V+F TQVMDID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

SwissProt top hits

e value

%identity

Alignment

P19892 Ras-related protein RABA5e

1.3e-13

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEF+ +SKATI V+F TQ M+I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

P28187 Ras-related protein RABA5c

2.3e-13

76.92

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLL+RYARNEFN +SKATI V+F TQ M ID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

Q40521 Ras-related protein Rab11B

3.3e-12

69.23

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSR++RNEFNL SK+TI V+F T+ + +DDK VKAQIWDTA QER+
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

Q9SIP0 Ras-related protein RABA5d

7.0e-15

78.85

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFN HSKATI V+F TQ M+I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

Q9SRS5 Ras-related protein RABA5b

4.2e-12

67.31

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSR++R+EF+ +SKATI V+F TQ+++I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

Arabidopsis top hits

e value

%identity

Alignment

AT1G05810.1 RAB GTPase homolog A5E

9.4e-15

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEF+ +SKATI V+F TQ M+I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

AT2G31680.1 RAB GTPase homolog A5D

5.0e-16

78.85

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSRYARNEFN HSKATI V+F TQ M+I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

1.6e-14

76.92

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLL+RYARNEFN +SKATI V+F TQ M ID K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

AT3G07410.1 RAB GTPase homolog A5B

3.0e-13

67.31

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSR++R+EF+ +SKATI V+F TQ+++I+ K+VKAQIWDTA QERF
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

AT5G45750.1 RAB GTPase homolog A1C

8.8e-13

63.46

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Query:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF
        V KSNLLSR+ +NEF+L SK+TI V+F T+ +++DDK +KAQIWDTA QER+
Subjt:  VRKSNLLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERF

Sequences

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CDS sequence

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ATGGGTTCCTCTCGATTTTCTTCCTCTTCGCGACCATCTTCGGCATGCATCTCTGCTTCACATGGATTTGCTTCGGGTGTGCTCGATTCCGGCGAAGATTTGGGTGTGCT
TCACGTGGATCTCTGCTTCGGGTTGAAGAATAAGAATGGATGTGCTTCGGTGGCTGTGCTTCAGAAATCCCAAACCAGAAGAACCGAGACCCAATACAAGTACAAGAAGA
AGAAGTCACAATTCGACCCTGAGCAATGTCGTCGTCGGACGGTGAAGGTGGCGAGGAGTATCTCTTCAAGATCGTCATTATCGAAGACTCCGCACGTCAGAAAATCCAAT
TTGTTGTCTCGTTATGCCAGAAACGAGTTCAATCTCCACTCCAAGGCCACCATCGATGTCAAATTTCATACTCAGGTGATGGACATTGACGACAAAAAGGTTAAGGCTCA
GATTTGGGACACTGCCGACCAGGAGCGGTTCCTAATGCACCTGCTTGTTCTTGCAATAATTGAGGTCGAGTGA

mRNA sequence

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Protein sequence

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MGSSRFSSSSRPSSACISASHGFASGVLDSGEDLGVLHVDLCFGLKNKNGCASVAVLQKSQTRRTETQYKYKKKKSQFDPEQCRRRTVKVARSISSRSSLSKTPHVRKSN
LLSRYARNEFNLHSKATIDVKFHTQVMDIDDKKVKAQIWDTADQERFLMHLLVLAIIEVE

Lag0011099 (gene) of Sponge gourd (AG-4) v1 genome