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Lag0011217 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011217
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionthioredoxin-like 3-1, chloroplastic
Genome locationchr1:18005651..18006004
RNA-Seq ExpressionLag0011217
SyntenyLag0011217
Gene Ontology termsGO:0009570 - chloroplast stroma (cellular component)
InterPro domainsIPR044253 - Thioredoxin-like 3-1/3-2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595600.1 Thioredoxin-like 3-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]2.5e-2969.16Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAA+ +QILY EVH  +H I  N GR CFVNRDFGS+LFGRR   R   RRRELK+  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
KAG7027572.1 Thioredoxin-like 3-1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.5e-2969.16Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAA+ +QILY EVH  +H I  N GR CFVNRDFGS+LFGRR   R   RRRELK+  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
XP_022924923.1 thioredoxin-like 3-1, chloroplastic [Cucurbita moschata]7.4e-2968.22Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAA+ +QILY E H  +H I  N GR CFVNRDFGS+LFGRR   R   RRRELK+  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
XP_022966464.1 thioredoxin-like 3-1, chloroplastic [Cucurbita maxima]9.6e-2967.29Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRNG-RLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAAS +QILY EVH  +H I  NG R CFVNRDFGS+LFGRR   +   RRRE ++  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRNG-RLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
XP_038883418.1 thioredoxin-like 3-1, chloroplastic isoform X2 [Benincasa hispida]1.3e-2864.36Show/hide
Query:  MSVLAASGSQILYREVHEHHILRNGRLCFVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFV
        MSVL A+ SQILYR++H+H IL  G+ CF+N DFG L         RRREL++ AEAGFWPDLSRP  VEMESIDDSDHLDRIL+H+  LSQP+LIDW  
Subjt:  MSVLAASGSQILYREVHEHHILRNGRLCFVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFV

Query:  S
        +
Subjt:  S
TrEMBL top hitse value%identityAlignment
A0A1S3B504 thioredoxin-like 3-1, chloroplastic7.0e-2560.78Show/hide
Query:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF
        M VL AS S ILY ++H+H  L NG+ C F+N DFG           RRREL++ AEAGFWPDLSRP  VEMESIDDSD LDRIL+HA  LSQP+LIDW 
Subjt:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF

Query:  VS
         +
Subjt:  VS
A0A5A7V069 Thioredoxin-like 3-17.0e-2560.78Show/hide
Query:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF
        M VL AS S ILY ++H+H  L NG+ C F+N DFG           RRREL++ AEAGFWPDLSRP  VEMESIDDSD LDRIL+HA  LSQP+LIDW 
Subjt:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF

Query:  VS
         +
Subjt:  VS
A0A5D3C8R2 Thioredoxin-like 3-17.0e-2560.78Show/hide
Query:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF
        M VL AS S ILY ++H+H  L NG+ C F+N DFG           RRREL++ AEAGFWPDLSRP  VEMESIDDSD LDRIL+HA  LSQP+LIDW 
Subjt:  MSVLAASGSQILYREVHEHHILRNGRLC-FVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWF

Query:  VS
         +
Subjt:  VS
A0A6J1EDU4 thioredoxin-like 3-1, chloroplastic3.6e-2968.22Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAA+ +QILY E H  +H I  N GR CFVNRDFGS+LFGRR   R   RRRELK+  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRN-GRLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
A0A6J1HTV8 thioredoxin-like 3-1, chloroplastic4.7e-2967.29Show/hide
Query:  MSVLAASGSQILYREVH--EHHILRNG-RLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV
        MSVLAAS +QILY EVH  +H I  NG R CFVNRDFGS+LFGRR   +   RRRE ++  EAGFWPDLSRP +VEMESI+DS+ LDRIL HA +LSQPV
Subjt:  MSVLAASGSQILYREVH--EHHILRNG-RLCFVNRDFGSLLFGRR---RNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPV

Query:  LIDWFVS
        LIDW  +
Subjt:  LIDWFVS
SwissProt top hitse value%identityAlignment
Q9FG36 Thioredoxin-like 3-1, chloroplastic4.1e-0631Show/hide
Query:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS
        AS  Q+L R+ H   +  + R   L    +  F   ++   + G    E +   +A FW ++++P  +EME I++ + LD +L HA  LSQP++I+W  S
Subjt:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS
Arabidopsis top hitse value%identityAlignment
AT5G06690.1 WCRKC thioredoxin 12.9e-0731Show/hide
Query:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS
        AS  Q+L R+ H   +  + R   L    +  F   ++   + G    E +   +A FW ++++P  +EME I++ + LD +L HA  LSQP++I+W  S
Subjt:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS
AT5G06690.2 WCRKC thioredoxin 12.9e-0731Show/hide
Query:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS
        AS  Q+L R+ H   +  + R   L    +  F   ++   + G    E +   +A FW ++++P  +EME I++ + LD +L HA  LSQP++I+W  S
Subjt:  ASGSQILYREVH---EHHILRNGRLCFVNR-DFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGTTTTGGCTGCAAGTGGTTCTCAGATTCTGTACAGAGAAGTTCATGAACACCACATACTCCGTAACGGGAGGCTCTGTTTCGTGAATCGGGATTTTGGA
TCTCTTTTGTTTGGGCGGAGAAGAAATGGAGCGCGGCGGAGGGAGTTGAAGCTGACGGCGGAAGCTGGGTTTTGGCCGGATTTGTCGCGGCCGCCGCTGGTGGAG
ATGGAGTCCATTGACGATTCCGATCACCTCGATCGGATTTTGCTTCACGCCCACGACTTATCTCAGCCCGTTCTCATCGATTGGTTCGTGTCTATCTCTTTATCT
TCTCCAACTTTTCATTTCCACATTTTAGGTTCCAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTGTTTTGGCTGCAAGTGGTTCTCAGATTCTGTACAGAGAAGTTCATGAACACCACATACTCCGTAACGGGAGGCTCTGTTTCGTGAATCGGGATTTTGGA
TCTCTTTTGTTTGGGCGGAGAAGAAATGGAGCGCGGCGGAGGGAGTTGAAGCTGACGGCGGAAGCTGGGTTTTGGCCGGATTTGTCGCGGCCGCCGCTGGTGGAG
ATGGAGTCCATTGACGATTCCGATCACCTCGATCGGATTTTGCTTCACGCCCACGACTTATCTCAGCCCGTTCTCATCGATTGGTTCGTGTCTATCTCTTTATCT
TCTCCAACTTTTCATTTCCACATTTTAGGTTCCAATTGA
Protein sequenceShow/hide protein sequence
MSVLAASGSQILYREVHEHHILRNGRLCFVNRDFGSLLFGRRRNGARRRELKLTAEAGFWPDLSRPPLVEMESIDDSDHLDRILLHAHDLSQPVLIDWFVSISLS
SPTFHFHILGSN