; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011223 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011223
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr1:18146152..18148762
RNA-Seq ExpressionLag0011223
SyntenyLag0011223
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]4.2e-3763.43Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        MS DQYAMDLGFT+VTRSR+R  G   G   ESSTPPRPSANL+ P G +VQM+PP S  +   SSTP P++YSQAVTP+KRFVPRPK+K  F+KS+V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRK
        +P IE E+Q L LE+ VS ++P  FNF+PEDLRK
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRK

KAA0032923.1 polyprotein [Cucumis melo var. makuwa]9.4e-3751.09Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL
        MS + YAMDL F  V+R R  S   T    +  SS PP PS  L+ PSG         S DA    S     PSSYSQ V P K F PRP +   F K+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL

Query:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQ
        ++ +  IEPEF G ++++  S ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+PDKNDPSK+ YSKL+IF+ L P++W Q
Subjt:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQ

KAA0038028.1 polyprotein [Cucumis melo var. makuwa]9.4e-3745.58Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL
        MS + YAMDL F  V+R R  S   T    +  SS PP PS  L+ PSG     +   S  A    S     PSSYSQ V P K F PRP +   F K+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL

Query:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQDSWESWCLCLVTFVSS
        ++ +  IEPEF G ++++  S ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+PDKNDPSK+ YSKL+IF+ L P++W Q  +       V    S
Subjt:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQDSWESWCLCLVTFVSS

Query:  EPIPPEFSRTVKFGNMTYSLAFYILG
         P  P       +    Y+ A+YILG
Subjt:  EPIPPEFSRTVKFGNMTYSLAFYILG

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.7e-4263.95Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        +S DQYAMDLGFT VTR  +RS G   GS  ESSTPPRPS NL+ PS G+VQMRPP S  +   SSTP P++YSQAVTP+KRFVPRP++K  F+K +V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTK
        +PIIE E+Q L  E+TVS ++P  FNF+ EDLRKTR FYEFIL DTK
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTK

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]1.1e-3763.04Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        MS DQYAMDLGFT VTRSR+RS   +  S+ ESSTPPRPSANL+ P GG VQMRPP S  +   SSTP P++YSQ VTP+KRFVPRP++K  F+KS+V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTF
        + IIEPE+Q + LE+TVS ++   FN +PEDLRKTR F
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTF

TrEMBL top hitse value%identityAlignment
A0A5A7SR64 Polyprotein4.5e-3751.09Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL
        MS + YAMDL F  V+R R  S   T    +  SS PP PS  L+ PSG         S DA    S     PSSYSQ V P K F PRP +   F K+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL

Query:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQ
        ++ +  IEPEF G ++++  S ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+PDKNDPSK+ YSKL+IF+ L P++W Q
Subjt:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQ

A0A5A7T5B0 Polyprotein4.5e-3745.58Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL
        MS + YAMDL F  V+R R  S   T    +  SS PP PS  L+ PSG     +   S  A    S     PSSYSQ V P K F PRP +   F K+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSV-GTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSST--PTPSSYSQAVTPEKRFVPRPKLKLTFKKSL

Query:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQDSWESWCLCLVTFVSS
        ++ +  IEPEF G ++++  S ++P GFNF+PEDL KTRTFYE+ILVD+KSAEITH+PDKNDPSK+ YSKL+IF+ L P++W Q  +       V    S
Subjt:  VINEPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQDSWESWCLCLVTFVSS

Query:  EPIPPEFSRTVKFGNMTYSLAFYILG
         P  P       +    Y+ A+YILG
Subjt:  EPIPPEFSRTVKFGNMTYSLAFYILG

A0A5A7TM80 Putative Retrotransposon protein4.7e-4263.95Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        +S DQYAMDLGFT VTR  +RS G   GS  ESSTPPRPS NL+ PS G+VQMRPP S  +   SSTP P++YSQAVTP+KRFVPRP++K  F+K +V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTK
        +PIIE E+Q L  E+TVS ++P  FNF+ EDLRKTR FYEFIL DTK
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTK

A0A5D3BM67 Uncharacterized protein5.4e-3863.04Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        MS DQYAMDLGFT VTRSR+RS   +  S+ ESSTPPRPSANL+ P GG VQMRPP S  +   SSTP P++YSQ VTP+KRFVPRP++K  F+KS+V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTF
        + IIEPE+Q + LE+TVS ++   FN +PEDLRKTR F
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTF

A0A5D3E4J4 Uncharacterized protein2.0e-3763.43Show/hide
Query:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN
        MS DQYAMDLGFT+VTRSR+R  G   G   ESSTPPRPSANL+ P G +VQM+PP S  +   SSTP P++YSQAVTP+KRFVPRPK+K  F+KS+V+ 
Subjt:  MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVIN

Query:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRK
        +P IE E+Q L LE+ VS ++P  FNF+PEDLRK
Subjt:  EPIIEPEFQGLNLEQTVSNMYPSGFNFMPEDLRK

SwissProt top hitse value%identityAlignment
O80612 Probable apyrase 62.0e-0580.77Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSEP+PPEFSRT+ FGN+TY+L
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL

Arabidopsis top hitse value%identityAlignment
AT1G14240.1 GDA1/CD39 nucleoside phosphatase family protein2.9e-0461.54Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSE +PPE+SRT+ +GN++Y++
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL

AT1G14240.2 GDA1/CD39 nucleoside phosphatase family protein2.9e-0461.54Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSE +PPE+SRT+ +GN++Y++
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL

AT1G14240.3 GDA1/CD39 nucleoside phosphatase family protein2.9e-0461.54Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSE +PPE+SRT+ +GN++Y++
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL

AT1G14240.4 GDA1/CD39 nucleoside phosphatase family protein2.9e-0461.54Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSE +PPE+SRT+ +GN++Y++
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL

AT2G02970.1 GDA1/CD39 nucleoside phosphatase family protein1.4e-0680.77Show/hide
Query:  VTFVSSEPIPPEFSRTVKFGNMTYSL
        VTFVSSEP+PPEFSRT+ FGN+TY+L
Subjt:  VTFVSSEPIPPEFSRTVKFGNMTYSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTGATCAATACGCCATGGATCTCGGGTTTACTCTGGTAACCCGTTCCAGAGCAAGATCCGTCGGTACACAACCCGGATCGACCATGGAGTCATCTACT
CCACCAAGGCCTTCGGCCAATTTAGTCTGTCCTTCTGGCGGAATCGTTCAAATGAGACCTCCTGTCTCATCTGATGCAAGGATAGGGTCATCAACCCCAACACCC
TCTTCATATTCTCAGGCGGTTACTCCTGAAAAGAGGTTTGTACCTCGTCCAAAATTAAAGCTTACTTTCAAAAAATCACTGGTCATCAATGAACCCATCATTGAA
CCAGAATTCCAAGGTCTCAACCTTGAACAGACCGTTTCCAACATGTACCCTTCAGGCTTCAACTTTATGCCTGAAGATTTGAGAAAAACTCGAACTTTCTATGAG
TTTATTCTTGTTGACACCAAATCAGCAGAAATAACTCATATTCCCGACAAAAATGATCCTTCAAAAGTTGCATATTCAAAGCTTAAGATATTCAAAGCCTTAAAT
CCAACCCATTGGAACCAAGATTCCTGGGAATCATGGTGCCTGTGTTTGGTTACTTTTGTTTCAAGTGAACCAATACCTCCTGAATTCTCACGTACAGTAAAATTT
GGCAATATGACTTATAGTCTTGCTTTCTACATTTTGGGCAGCCGTGTAGTTGCTTCTCCTTCGTTGTGGTTGTTGTCGTCGTTGTCTGCTCATCGCCGTCACTTA
ATCGTCGTCGTCGTTCCTTGTCTATGTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTGATCAATACGCCATGGATCTCGGGTTTACTCTGGTAACCCGTTCCAGAGCAAGATCCGTCGGTACACAACCCGGATCGACCATGGAGTCATCTACT
CCACCAAGGCCTTCGGCCAATTTAGTCTGTCCTTCTGGCGGAATCGTTCAAATGAGACCTCCTGTCTCATCTGATGCAAGGATAGGGTCATCAACCCCAACACCC
TCTTCATATTCTCAGGCGGTTACTCCTGAAAAGAGGTTTGTACCTCGTCCAAAATTAAAGCTTACTTTCAAAAAATCACTGGTCATCAATGAACCCATCATTGAA
CCAGAATTCCAAGGTCTCAACCTTGAACAGACCGTTTCCAACATGTACCCTTCAGGCTTCAACTTTATGCCTGAAGATTTGAGAAAAACTCGAACTTTCTATGAG
TTTATTCTTGTTGACACCAAATCAGCAGAAATAACTCATATTCCCGACAAAAATGATCCTTCAAAAGTTGCATATTCAAAGCTTAAGATATTCAAAGCCTTAAAT
CCAACCCATTGGAACCAAGATTCCTGGGAATCATGGTGCCTGTGTTTGGTTACTTTTGTTTCAAGTGAACCAATACCTCCTGAATTCTCACGTACAGTAAAATTT
GGCAATATGACTTATAGTCTTGCTTTCTACATTTTGGGCAGCCGTGTAGTTGCTTCTCCTTCGTTGTGGTTGTTGTCGTCGTTGTCTGCTCATCGCCGTCACTTA
ATCGTCGTCGTCGTTCCTTGTCTATGTGTGTAG
Protein sequenceShow/hide protein sequence
MSVDQYAMDLGFTLVTRSRARSVGTQPGSTMESSTPPRPSANLVCPSGGIVQMRPPVSSDARIGSSTPTPSSYSQAVTPEKRFVPRPKLKLTFKKSLVINEPIIE
PEFQGLNLEQTVSNMYPSGFNFMPEDLRKTRTFYEFILVDTKSAEITHIPDKNDPSKVAYSKLKIFKALNPTHWNQDSWESWCLCLVTFVSSEPIPPEFSRTVKF
GNMTYSLAFYILGSRVVASPSLWLLSSLSAHRRHLIVVVVPCLCV