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Lag0011225 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011225
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr1:18183607..18184119
RNA-Seq ExpressionLag0011225
SyntenyLag0011225
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34145.1 hypothetical protein [Cucumis melo subsp. melo]2.5e-2547.9Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG  P+ SS S P+PMSA QY MDLGFT V R R+R +S+ I    ES T PPRPS ++ RPS             V QMRP  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  AV   KRF+P+PEIK+YF+KS+ +  PIIEPE+   ++ E++  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

KAA0026217.1 hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa]1.1e-2246.11Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG   + SS S P+PMSADQYAMDLGFT V R R+R + + I    ES T PPRPSA++ RP              V QM+P  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  AV P KRF+P+P+IK YF+KS+ +  P IE E+   ++ E +  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

KAA0043136.1 putative Retrotransposon protein [Cucumis melo var. makuwa]2.3e-2346.99Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG  P  SS S P+P+SADQYAMDLGFT V R  +RS  + I    ES T PPRPS ++ RPS           + V QMRP  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFI
        +++ S+ PTT+  AV P KRF+P+PEIK+YF+K + +  PIIE E+   +  E +  I+P+ F F+
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFI

KAA0066421.1 hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa]8.2e-2146.15Show/hide
Query:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQQGSSIPTTFVDAVQPPKRFIPK
        MSADQYAMDLGFT V R R+RS+S++I  S ES T PPRPSA++ RP                QMRP  SPS   S+++ S+ PTT+   V P KRF+P+
Subjt:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQQGSSIPTTFVDAVQPPKRFIPK

Query:  PEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        PEIK+YF+KS+ +   IIEPE+   ++ + +  I+   F  +P
Subjt:  PEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

KAE8646253.1 hypothetical protein Csa_023844, partial [Cucumis sativus]6.7e-2345.45Show/hide
Query:  KASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQ
        +A+S+SS+G  P+ SS S P+PMSADQYAMDLGFT V R R RS+ +QI    +S T PPR SA++ RPS           + V QMRP  SP    S++
Subjt:  KASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQ

Query:  QGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        + S+ PTT+   + P KRF+P+ EIK+YF+K + +   IIEPE+   ++ E +  I+P  F F+P
Subjt:  QGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

TrEMBL top hitse value%identityAlignment
A0A5A7TM80 Putative Retrotransposon protein1.1e-2346.99Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG  P  SS S P+P+SADQYAMDLGFT V R  +RS  + I    ES T PPRPS ++ RPS           + V QMRP  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFI
        +++ S+ PTT+  AV P KRF+P+PEIK+YF+K + +  PIIE E+   +  E +  I+P+ F F+
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFI

A0A5D3BM67 Uncharacterized protein4.0e-2146.15Show/hide
Query:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQQGSSIPTTFVDAVQPPKRFIPK
        MSADQYAMDLGFT V R R+RS+S++I  S ES T PPRPSA++ RP                QMRP  SPS   S+++ S+ PTT+   V P KRF+P+
Subjt:  MSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQQGSSIPTTFVDAVQPPKRFIPK

Query:  PEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        PEIK+YF+KS+ +   IIEPE+   ++ + +  I+   F  +P
Subjt:  PEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

A0A5D3CKX1 Uncharacterized protein3.4e-2050Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG  P+ SS S P+PMSADQY MDLGFT V R R+RS+S++     ES T PPRP A++ RPS             V QMRP  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPII
        +++ S+ PTT+  AV P KRF+P+P+IK+YF+K + +  PII
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPII

A0A5D3E4J4 Uncharacterized protein5.6e-2346.11Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG   + SS S P+PMSADQYAMDLGFT V R R+R + + I    ES T PPRPSA++ RP              V QM+P  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  AV P KRF+P+P+IK YF+KS+ +  P IE E+   ++ E +  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

E5GCE6 Uncharacterized protein1.2e-2547.9Show/hide
Query:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS
        RG+ +S+SSKG  P+ SS S P+PMSA QY MDLGFT V R R+R +S+ I    ES T PPRPS ++ RPS             V QMRP  SPS   S
Subjt:  RGKASSSSSKGKSPALSSKS-PAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPS

Query:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP
        +++ S+ PTT+  AV   KRF+P+PEIK+YF+KS+ +  PIIEPE+   ++ E++  I+P+ F F+P
Subjt:  SQQGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATCAACGAGGCAAAGCCTCTTCATCTTCTTCAAAGGGCAAAAGCCCAGCTTTATCTTCAAAATCTCCAGCTCCTATGAGCGCAGATCAATATGCCATG
GATCTTGGCTTCACTCCCGTGAACCGTCCAAGAACCAGAAGCGCATCTCTTCAAATCCGTGATTCAATGGAGTCTTTAACTCCACCACCGAGGCCATCTGCCTCT
GTTGCACGGCCTTCTGCCGTTCCTTCAATGAGACCTACTGTCTCTCCGACTTCTGTAACTCAAATGAGACCTACTGTCTCTCCATCTACCCAACCTTCATCTCAA
CAGGGATCTTCTATCCCTACAACTTTTGTGGATGCTGTTCAGCCTCCCAAAAGATTCATTCCAAAACCCGAAATCAAAAATTATTTTGAAAAGTCACTTCAATTA
TCAAAACCAATTATTGAACCCGAATTCGACGGGTCTTCAATTATTGAAATTATTCAAAATATTTATCCTCAAGGATTCTATTTCATCCCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATCAACGAGGCAAAGCCTCTTCATCTTCTTCAAAGGGCAAAAGCCCAGCTTTATCTTCAAAATCTCCAGCTCCTATGAGCGCAGATCAATATGCCATG
GATCTTGGCTTCACTCCCGTGAACCGTCCAAGAACCAGAAGCGCATCTCTTCAAATCCGTGATTCAATGGAGTCTTTAACTCCACCACCGAGGCCATCTGCCTCT
GTTGCACGGCCTTCTGCCGTTCCTTCAATGAGACCTACTGTCTCTCCGACTTCTGTAACTCAAATGAGACCTACTGTCTCTCCATCTACCCAACCTTCATCTCAA
CAGGGATCTTCTATCCCTACAACTTTTGTGGATGCTGTTCAGCCTCCCAAAAGATTCATTCCAAAACCCGAAATCAAAAATTATTTTGAAAAGTCACTTCAATTA
TCAAAACCAATTATTGAACCCGAATTCGACGGGTCTTCAATTATTGAAATTATTCAAAATATTTATCCTCAAGGATTCTATTTCATCCCGTAA
Protein sequenceShow/hide protein sequence
MSDQRGKASSSSSKGKSPALSSKSPAPMSADQYAMDLGFTPVNRPRTRSASLQIRDSMESLTPPPRPSASVARPSAVPSMRPTVSPTSVTQMRPTVSPSTQPSSQ
QGSSIPTTFVDAVQPPKRFIPKPEIKNYFEKSLQLSKPIIEPEFDGSSIIEIIQNIYPQGFYFIP