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Lag0011235 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011235
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPMD domain-containing protein
Genome locationchr1:18667421..18668061
RNA-Seq ExpressionLag0011235
SyntenyLag0011235
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034815.1 hypothetical protein E6C27_scaffold213G00490 [Cucumis melo var. makuwa]1.3e-1633.51Show/hide
Query:  MPIRGRFYEEVIPSFKELTASNNQQN--IFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVN---------------------------------
        +PI+G FYEE IPSFKELT+++  +   +       F  + +  T +         ++  P GS++                                  
Subjt:  MPIRGRFYEEVIPSFKELTASNNQQN--IFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVN---------------------------------

Query:  -------KGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
                   + +RL VF+VASLM  G  +S AV VLANIYHGLG ++ AS  +GR+D    +HY+ GWLAHYFGT+Y  P +V
Subjt:  -------KGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

KAA0053466.1 hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]6.7e-1659.72Show/hide
Query:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        +RL VF+VASLM  G  +S AV VLANIYHGLG ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y  P +V
Subjt:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

KAA0053734.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.9e-1942.14Show/hide
Query:  GRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTL-QVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGL
        G FYEE IPSFKELT+++  +        T  + +TC  L Q     +    +     S+ +    + +R  VF+ ASLM  G  +S AV +LANIYHGL
Subjt:  GRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTL-QVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGL

Query:  GNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        G ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y    KV
Subjt:  GNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

KAA0057575.1 hypothetical protein E6C27_scaffold497G00470 [Cucumis melo var. makuwa]1.5e-1559.72Show/hide
Query:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        +R  VF+VASLMV G  +S AV VLANIYHGLG ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y  P +V
Subjt:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

KAG5576232.1 hypothetical protein H5410_056366 [Solanum commersonii]4.6e-1745.65Show/hide
Query:  MPIRGRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIY
        +P+ G FY+EVIPS KELT  ++Q   F  +A ++S+ ST   L    I  F     LP     NK   + IR SVFKVASLMV G  FS AV VLA+IY
Subjt:  MPIRGRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIY

Query:  HGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYK
         GL ++S +S ++G  +  LP+HY++GW+  YF T Y+
Subjt:  HGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYK

TrEMBL top hitse value%identityAlignment
A0A5A7T019 PMD domain-containing protein6.5e-1733.51Show/hide
Query:  MPIRGRFYEEVIPSFKELTASNNQQN--IFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVN---------------------------------
        +PI+G FYEE IPSFKELT+++  +   +       F  + +  T +         ++  P GS++                                  
Subjt:  MPIRGRFYEEVIPSFKELTASNNQQN--IFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVN---------------------------------

Query:  -------KGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
                   + +RL VF+VASLM  G  +S AV VLANIYHGLG ++ AS  +GR+D    +HY+ GWLAHYFGT+Y  P +V
Subjt:  -------KGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

A0A5A7UET3 Putative mitochondrial protein1.4e-1942.14Show/hide
Query:  GRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTL-QVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGL
        G FYEE IPSFKELT+++  +        T  + +TC  L Q     +    +     S+ +    + +R  VF+ ASLM  G  +S AV +LANIYHGL
Subjt:  GRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTL-QVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGL

Query:  GNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        G ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y    KV
Subjt:  GNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

A0A5A7UGW6 PMD domain-containing protein3.2e-1659.72Show/hide
Query:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        +RL VF+VASLM  G  +S AV VLANIYHGLG ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y  P +V
Subjt:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

A0A5A7UVI5 PMD domain-containing protein7.2e-1659.72Show/hide
Query:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
        +R  VF+VASLMV G  +S AV VLANIYHGLG ++ AS  +GR+D   P+HY+ GWLAHYFGT+Y  P +V
Subjt:  IRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

A0A5D3C0F3 Uncharacterized protein1.6e-1534.91Show/hide
Query:  MPIRGRFYEEVIPSFKELTASNNQ---------QNIFQKVANTFSMHSTCLTLQVLTIPMFQSASGL-----PFGSRVNKGNANHIRLSVF---------
        +PI+G FYEE IPSFKELT+++           Q +FQ   +         +         + AS       P GS++     +     +F         
Subjt:  MPIRGRFYEEVIPSFKELTASNNQ---------QNIFQKVANTFSMHSTCLTLQVLTIPMFQSASGL-----PFGSRVNKGNANHIRLSVF---------

Query:  ---KVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV
            VASLM     +S AV +LAN+YHGLG ++ AS  +GR+D   P++Y+ GWLAHYFGT+Y  P +V
Subjt:  ---KVASLMVEGRTFSFAVLVLANIYHGLGNVSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATCAGAGGTAGATTTTATGAGGAAGTTATCCCTAGCTTTAAAGAGTTAACTGCGTCCAACAACCAGCAAAACATCTTCCAAAAAGTTGCGAACACCTTT
TCCATGCATTCTACTTGCTTAACGCTTCAAGTACTGACCATTCCCATGTTCCAATCAGCTTCTGGACTTCCTTTTGGTTCAAGGGTGAACAAAGGTAATGCTAAC
CACATTCGTCTTAGTGTTTTTAAGGTTGCCAGCTTAATGGTTGAGGGGAGAACTTTCAGTTTTGCAGTCCTTGTCCTTGCCAACATCTACCACGGGTTAGGCAAT
GTTTCCAATGCTTCTGTTTCAGTTGGACGCATAGATGCTTCTCTCCCCGTGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAATTATAAGACTCCA
GCGAAAGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATCAGAGGTAGATTTTATGAGGAAGTTATCCCTAGCTTTAAAGAGTTAACTGCGTCCAACAACCAGCAAAACATCTTCCAAAAAGTTGCGAACACCTTT
TCCATGCATTCTACTTGCTTAACGCTTCAAGTACTGACCATTCCCATGTTCCAATCAGCTTCTGGACTTCCTTTTGGTTCAAGGGTGAACAAAGGTAATGCTAAC
CACATTCGTCTTAGTGTTTTTAAGGTTGCCAGCTTAATGGTTGAGGGGAGAACTTTCAGTTTTGCAGTCCTTGTCCTTGCCAACATCTACCACGGGTTAGGCAAT
GTTTCCAATGCTTCTGTTTCAGTTGGACGCATAGATGCTTCTCTCCCCGTGCATTACATTTTTGGTTGGCTCGCCCATTATTTTGGTACCAATTATAAGACTCCA
GCGAAAGTTTGA
Protein sequenceShow/hide protein sequence
MPIRGRFYEEVIPSFKELTASNNQQNIFQKVANTFSMHSTCLTLQVLTIPMFQSASGLPFGSRVNKGNANHIRLSVFKVASLMVEGRTFSFAVLVLANIYHGLGN
VSNASVSVGRIDASLPVHYIFGWLAHYFGTNYKTPAKV