CuGenDBv2

Gene ID	Lag0011236
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	PMD domain-containing protein
Genome location	chr1:18668071..18668805
RNA-Seq Expression	Lag0011236
Synteny	Lag0011236
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADN34118.1 hypothetical protein [Cucumis melo subsp. melo]

6.2e-54

49.32

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SYF S+ SCYLS RC+++ +I  Y+PYR+ RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R    F+++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S I   +QP+LPK   S  GGKE+ +++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

KAA0025356.1 hypothetical protein E6C27_scaffold1204G00400 [Cucumis melo var. makuwa]

1.1e-53

48.4

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SY  S+CSCYLS RC+++ +I  Y+PY+  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R +   +++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S IP  +Q +LPK      GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

KAA0047478.1 hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa]

3.6e-54

48.86

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F  EGG+IYF E EARELIH GA I WH +L +R+K+E +       F+ +SYF S+ SCYLS RC+++ +I  Y+PYR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R +   +++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S IP  +QP+LPK   S  GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

KAA0050516.1 hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa]

1.5e-52

47.44

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F G GG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SYF S+ SCYLS RC+++ +I  Y+ YR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+H R+C R +   +++LP R+L P  HVT ++  WW+ K+  Y  D+   LV S IPS +QP+LPK   S  GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKRAKIPKKLLISMKSPS
         KE   ES NS  DRHWKR    KK  +S   P+
Subjt:  TKE---ESQNSTGDRHWKRAKIPKKLLISMKSPS

KAA0053466.1 hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa]

8.6e-56

50.23

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH G  I WH NL +RNK+E +       F+  SYF S+ SCYLS RC+++ +I  Y+PYR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C+R +   +++LP R+L P  HVT R+  WW+ K+ NY  D+   LV S IP  +QP+LPK   S  GGKE+R+++ +A +L+D 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE-ESQNSTGDRHWKR
          E ES ++  DRHWKR
Subjt:  TKE-ESQNSTGDRHWKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SHN8 PMD domain-containing protein

5.1e-54

48.4

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SY  S+CSCYLS RC+++ +I  Y+PY+  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R +   +++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S IP  +Q +LPK      GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

A0A5A7TX42 Uncharacterized protein

1.8e-54

48.86

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F  EGG+IYF E EARELIH GA I WH +L +R+K+E +       F+ +SYF S+ SCYLS RC+++ +I  Y+PYR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R +   +++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S IP  +QP+LPK   S  GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

A0A5A7U8L3 PMD domain-containing protein

7.4e-53

47.44

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F G GG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SYF S+ SCYLS RC+++ +I  Y+ YR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+H R+C R +   +++LP R+L P  HVT ++  WW+ K+  Y  D+   LV S IPS +QP+LPK   S  GGKE+R+++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKRAKIPKKLLISMKSPS
         KE   ES NS  DRHWKR    KK  +S   P+
Subjt:  TKE---ESQNSTGDRHWKRAKIPKKLLISMKSPS

A0A5A7UGW6 PMD domain-containing protein

4.2e-56

50.23

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH G  I WH NL +RNK+E +       F+  SYF S+ SCYLS RC+++ +I  Y+PYR  RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C+R +   +++LP R+L P  HVT R+  WW+ K+ NY  D+   LV S IP  +QP+LPK   S  GGKE+R+++ +A +L+D 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE-ESQNSTGDRHWKR
          E ES ++  DRHWKR
Subjt:  TKE-ESQNSTGDRHWKR

E5GCB9 PMD domain-containing protein

3.0e-54

49.32

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Query:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV
        M +F GEGG+IYF E EARELIH GA I WH NL +R+K+E +       F+  SYF S+ SCYLS RC+++ +I  Y+PYR+ RQFG YQDLPND+  +
Subjt:  MVDFFGEGGAIYFDELEARELIHGGASISWHMNL-SRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEV

Query:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS
         P +TL+NIL+HWR+C R    F+++LP R+L P  HVT R+  WW+ K+  Y  D+   LV S I   +QP+LPK   S  GGKE+ +++ +A +L++ 
Subjt:  LPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLK-LARSLDDS

Query:  TKE---ESQNSTGDRHWKR
         KE   ES +S  DRHWKR
Subjt:  TKE---ESQNSTGDRHWKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G50830.1 Aminotransferase-like, plant mobile domain family protein

2.5e-05

28.04

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Query:  FSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEVLPLVTLE---NILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNY
        F+S   C    +      +E Y P R++RQFG+ QDLP        L T +        W    ++     +++P+R    Q  VT+RYR WW +    +
Subjt:  FSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEVLPLVTLE---NILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNY

Query:  LGDDISK
        L  +  K
Subjt:  LGDDISK

AT5G18510.1 Aminotransferase-like, plant mobile domain family protein

1.0e-06

26.95

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Query:  FSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEVLPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLG-
        F+S   C        +  +E Y PYR++RQFG+ QDLP  LV     +T ++    W     +     ++LP++    + +VT+RY+ WW +    Y G 
Subjt:  FSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEVLPLVTLENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLG-

Query:  DDISK-LVDSFIPSRAQPKLPK---KGDSKFGGKELRMLKLARSLDDSTKEESQNSTGDRHWKRAKI
        ++I K   ++F        L K    GD     K   + ++ + L++    + + S   R  KR KI
Subjt:  DDISK-LVDSFIPSRAQPKLPK---KGDSKFGGKELRMLKLARSLDDSTKEESQNSTGDRHWKRAKI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGTTGACTTTTTCGGCGAAGGTGGAGCTATATATTTTGATGAGCTCGAGGCTCGCGAATTGATCCATGGGGGTGCATCCATATCATGGCACATGAACCTCAGC
AGGAACAAAAACGAGACCATAAAGTATGAAAAGATTATGAAATTTATACCTTCTTCCTATTTCTCGAGCCTTTGCTCATGCTATCTGTCAGTGCGATGTAAAGAT
TCATTAGTTATCGAACCCTACAACCCCTACCGAATCAGCCGCCAGTTTGGTGTTTATCAAGACTTACCTAATGACTTAGTAGAAGTTTTGCCCCTAGTCACCTTG
GAAAACATTTTACACCACTGGCGGGTTTGCCTGCGAACCAGTGCAGAGTTTCAAATATTTCTTCCAACTCGTACATTGAATCCTCAAGACCATGTCACTTCACGT
TATCGAAGTTGGTGGTCTGAAAAGTATGATAATTACCTAGGGGACGACATAAGTAAGTTGGTTGACAGTTTCATTCCCTCTCGAGCCCAACCCAAGCTACCTAAA
AAAGGAGACTCTAAATTTGGGGGAAAAGAACTCCGTATGCTCAAGCTTGCCAGATCTCTAGACGATTCAACTAAAGAAGAGAGTCAAAACAGCACTGGAGATCGA
CACTGGAAAAGAGCCAAAATACCCAAAAAGCTTCTAATCTCGATGAAAAGTCCATCAAGAGTGCCTCTTATGCTTCACAAACTCCTGAAAACACTGAGACTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MVDFFGEGGAIYFDELEARELIHGGASISWHMNLSRNKNETIKYEKIMKFIPSSYFSSLCSCYLSVRCKDSLVIEPYNPYRISRQFGVYQDLPNDLVEVLPLVTL
ENILHHWRVCLRTSAEFQIFLPTRTLNPQDHVTSRYRSWWSEKYDNYLGDDISKLVDSFIPSRAQPKLPKKGDSKFGGKELRMLKLARSLDDSTKEESQNSTGDR
HWKRAKIPKKLLISMKSPSRVPLMLHKLLKTLRL

Lag0011236 (gene) of Sponge gourd (AG-4) v1 genome