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Lag0011242 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011242
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationchr1:18838667..18839485
RNA-Seq ExpressionLag0011242
SyntenyLag0011242
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053247.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.3e-1333.62Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------
        K+ EGWWKSILA RSDA A                                          +YTE+SRYADVIVA ESDRCRS                 
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------

Query:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG
                            QDFK RS G++ R MS  S +Q                                  SCG+NH+GQCLVG G+CYQCGQPG
Subjt:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG

Query:  -FQEG---LSITEGNGSEGPGSRSHTVEQQIV
         F++    L++T   G +G GS+  TVEQ  V
Subjt:  -FQEG---LSITEGNGSEGPGSRSHTVEQQIV

KAA0060066.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]9.0e-1231.49Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------
        K+ EGWWKSILA RSDA A                                          +YTELSRYADVIVASESDRCR                  
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------

Query:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY
                                                               QDFK RS GQ+ R  S +S  +     SCG+NH+GQCLVG G+CY
Subjt:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY

Query:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV
        QCGQPG F++             G  S TVEQ  V
Subjt:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV

KAA0061627.1 putative polyprotein [Cucumis melo var. makuwa]2.0e-1131.49Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------
        K+ EGWWKSILA RSDA A                                          +YTELSRYADVIVASESDRCR                  
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------

Query:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY
                                                               QDFK RS GQ  R  S +S  +     SCG+NH+GQCLVG G+CY
Subjt:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY

Query:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV
        QCGQPG F++             G  S TVEQ  V
Subjt:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV

KAA0067805.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.1e-1240.74Show/hide
Query:  MLKKLEGWWKSILASRSDALA--------EYTELSRYADVIVASESDRCR-----------------------SQDFKT-----------RSSGQSLRQM
        +LK+ EGWWKSILA RSDA +        +YTELSRYADVI+ASESDRCR                       SQ  KT           +S+ +  R  
Subjt:  MLKKLEGWWKSILASRSDALA--------EYTELSRYADVIVASESDRCR-----------------------SQDFKT-----------RSSGQSLRQM

Query:  SSSSAY--QSCGKNHQGQCLVGGGLCYQCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV
        S +S +  +   +NH+GQCLVG G+CYQCGQ G F++             G  S TVEQ  V
Subjt:  SSSSAY--QSCGKNHQGQCLVGGGLCYQCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]9.0e-1233Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------
        K+ EGWWKSI+  R+DA                                            +YTELSRYA VIVAS+SDRCRS                 
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------

Query:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG
                            QDFK RS G+ LRQMSS SAYQ                                  SCGK+H GQCLVG G+CYQCGQ G
Subjt:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG

TrEMBL top hitse value%identityAlignment
A0A5A7TA17 Putative gag-pol polyprotein2.2e-1131.9Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------
        K+ EGWWKSILA RSDA A                                          +YTELSRYADVIVASESDRCRS                 
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------

Query:  ------------------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGG
                                      QDFK RS GQ+ R +S  S +Q                                  SCG+NH+GQCLVG 
Subjt:  ------------------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGG

Query:  GLCYQCGQPG
        G+CYQCGQ G
Subjt:  GLCYQCGQPG

A0A5A7UFH6 DNA/RNA polymerases superfamily protein6.1e-1433.62Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------
        K+ EGWWKSILA RSDA A                                          +YTE+SRYADVIVA ESDRCRS                 
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------

Query:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG
                            QDFK RS G++ R MS  S +Q                                  SCG+NH+GQCLVG G+CYQCGQPG
Subjt:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG

Query:  -FQEG---LSITEGNGSEGPGSRSHTVEQQIV
         F++    L++T   G +G GS+  TVEQ  V
Subjt:  -FQEG---LSITEGNGSEGPGSRSHTVEQQIV

A0A5A7V411 Putative polyprotein9.7e-1231.49Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------
        K+ EGWWKSILA RSDA A                                          +YTELSRYADVIVASESDRCR                  
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCR------------------

Query:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY
                                                               QDFK RS GQ  R  S +S  +     SCG+NH+GQCLVG G+CY
Subjt:  ------------------------------------------------------SQDFKTRSSGQSLRQMSSSSAYQ-----SCGKNHQGQCLVGGGLCY

Query:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV
        QCGQPG F++             G  S TVEQ  V
Subjt:  QCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV

A0A5A7VQ28 Retrotransposable element Tf25.1e-1340.74Show/hide
Query:  MLKKLEGWWKSILASRSDALA--------EYTELSRYADVIVASESDRCR-----------------------SQDFKT-----------RSSGQSLRQM
        +LK+ EGWWKSILA RSDA +        +YTELSRYADVI+ASESDRCR                       SQ  KT           +S+ +  R  
Subjt:  MLKKLEGWWKSILASRSDALA--------EYTELSRYADVIVASESDRCR-----------------------SQDFKT-----------RSSGQSLRQM

Query:  SSSSAY--QSCGKNHQGQCLVGGGLCYQCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV
        S +S +  +   +NH+GQCLVG G+CYQCGQ G F++             G  S TVEQ  V
Subjt:  SSSSAY--QSCGKNHQGQCLVGGGLCYQCGQPG-FQEGLSITEGNGSEGPGSRSHTVEQQIV

A0A5D3CJX3 CCHC-type domain-containing protein4.3e-1233Show/hide
Query:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------
        K+ EGWWKSI+  R+DA                                            +YTELSRYA VIVAS+SDRCRS                 
Subjt:  KKLEGWWKSILASRSDALA------------------------------------------EYTELSRYADVIVASESDRCRS-----------------

Query:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG
                            QDFK RS G+ LRQMSS SAYQ                                  SCGK+H GQCLVG G+CYQCGQ G
Subjt:  --------------------QDFKTRSSGQSLRQMSSSSAYQ----------------------------------SCGKNHQGQCLVGGGLCYQCGQPG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGAAGCTGGAGGGATGGTGGAAATCCATTTTAGCTAGCCGCAGTGATGCACTGGCTGAGTATACTGAGCTTTCACGGTATGCCGATGTGATTGTGGCA
TCTGAGAGTGACAGGTGTCGAAGTCAAGACTTCAAGACTCGATCTAGTGGCCAGTCATTGAGGCAGATGAGTTCGAGTAGTGCCTATCAGAGTTGTGGCAAGAAT
CATCAGGGTCAGTGTCTTGTTGGCGGCGGTTTGTGTTACCAGTGTGGACAACCAGGGTTTCAAGAGGGATTGTCCATAACTGAGGGCAACGGTTCAGAGGGACCA
GGGAGTCGATCCCACACAGTTGAGCAGCAGATAGTCTTAGGAGGCGCAGGTGTTGGGTTTAATGTCCGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGAAGCTGGAGGGATGGTGGAAATCCATTTTAGCTAGCCGCAGTGATGCACTGGCTGAGTATACTGAGCTTTCACGGTATGCCGATGTGATTGTGGCA
TCTGAGAGTGACAGGTGTCGAAGTCAAGACTTCAAGACTCGATCTAGTGGCCAGTCATTGAGGCAGATGAGTTCGAGTAGTGCCTATCAGAGTTGTGGCAAGAAT
CATCAGGGTCAGTGTCTTGTTGGCGGCGGTTTGTGTTACCAGTGTGGACAACCAGGGTTTCAAGAGGGATTGTCCATAACTGAGGGCAACGGTTCAGAGGGACCA
GGGAGTCGATCCCACACAGTTGAGCAGCAGATAGTCTTAGGAGGCGCAGGTGTTGGGTTTAATGTCCGTTAA
Protein sequenceShow/hide protein sequence
MLKKLEGWWKSILASRSDALAEYTELSRYADVIVASESDRCRSQDFKTRSSGQSLRQMSSSSAYQSCGKNHQGQCLVGGGLCYQCGQPGFQEGLSITEGNGSEGP
GSRSHTVEQQIVLGGAGVGFNVR