; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011245 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011245
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr1:18925445..18931805
RNA-Seq ExpressionLag0011245
SyntenyLag0011245
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037545.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-13885.62Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVTTPIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFD+K LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT K SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-14087.63Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVE VVNWERPASATEVRSFLGL GYY RFVEDFS+LA+PLT LTRKNA+FEW DKCEQSFQELKKRLVT PILT PI+GKE
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASRQGLGCVLMQEGKVIAY SRQL KHE NYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKD D TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YH GKANVVA+ALSRKSRL KSAL GIRA+LLSELR FKAV+TA+SSGSLLAQFQV  SLVAEIV RQPEDSNLQKMLAK+KQGPE E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-13885.28Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVT PIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT + SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.0e-13885.28Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVT PIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT + SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-14087.63Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVE VVNWERPASATEVRSFLGL GYY RFVEDFS+LA+PLT LTRKNA+FEW DKCEQSFQELKKRLVT PILT PI+GKE
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASRQGLGCVLMQEGKVIAY SRQL KHE NYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKD D TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YH GKANVVA+ALSRKSRL KSAL GIRA+LLSELR FKAV+TA+SSGSLLAQFQV  SLVAEIV RQPEDSNLQKMLAK+KQGPE E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase1.2e-14087.63Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVE VVNWERPASATEVRSFLGL GYY RFVEDFS+LA+PLT LTRKNA+FEW DKCEQSFQELKKRLVT PILT PI+GKE
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASRQGLGCVLMQEGKVIAY SRQL KHE NYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKD D TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YH GKANVVA+ALSRKSRL KSAL GIRA+LLSELR FKAV+TA+SSGSLLAQFQV  SLVAEIV RQPEDSNLQKMLAK+KQGPE E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

A0A5A7T7W9 Reverse transcriptase6.6e-13985.62Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVTTPIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFD+K LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT K SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

A0A5A7U2V7 Reverse transcriptase1.5e-13885.28Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVT PIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT + SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

A0A5D3BHI1 Reverse transcriptase1.5e-13885.28Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVEAVVNWERP SATEVRSFLGL GYY RF+EDFSRLA+PLT LTRKN KFEWSDKCEQSFQELKKRLVT PIL  P+TGK+
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASR GLGCVLMQ+G VIAYASRQL +HECNYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKDYD TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YHPGKANVVADALSRKSRL KSAL GIR  LL+ELRG KAVVT + SGSLLAQFQVR SLV EIVRRQ EDSNLQK   KSK+G E E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

A0A5D3BTP3 Reverse transcriptase1.2e-14087.63Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        VVFLGHVVSA GVSVDPQKVE VVNWERPASATEVRSFLGL GYY RFVEDFS+LA+PLT LTRKNA+FEW DKCEQSFQELKKRLVT PILT PI+GKE
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        YVIY DASRQGLGCVLMQEGKVIAY SRQL KHE NYPTHDLELAAVVLALKIWRHYLF +KCHIFT+HKSLKYIFDQK LNLRQRRWLELIKD D TIE
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK
        YH GKANVVA+ALSRKSRL KSAL GIRA+LLSELR FKAV+TA+SSGSLLAQFQV  SLVAEIV RQPEDSNLQKMLAK+KQGPE E ELR DGAIVK
Subjt:  YHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECELRADGAIVK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.5e-4340.19Show/hide
Query:  FLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSD-KCEQSFQELKKRLVTTPILTPPITGKEY
        FLGHV++ DG+  +P+K+EA+  +  P    E+++FLGLTGYY +F+ +F+ +A P+T   +KN K + ++ + + +F++LK  +   PIL  P   K++
Subjt:  FLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSD-KCEQSFQELKKRLVTTPILTPPITGKEY

Query:  VIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIEY
         +  DAS   LG VL Q+G  ++Y SR LN+HE NY T + EL A+V A K +RHYL      I ++H+ L +++  K  N +  RW   + ++D+ I+Y
Subjt:  VIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIEY

Query:  HPGKANVVADALSR
          GK N VADALSR
Subjt:  HPGKANVVADALSR

P10394 Retrovirus-related Pol polyprotein from transposon 4128.6e-3536.53Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE
        V FLGH  +  G+  D +K + + N+  P  A   R F+    YY RF+++F+  +  +T L +KN  FEW+D+C+++F  LK +L+   +L  P   KE
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGK----VIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYD
        + I  DAS+Q  G VL Q        +AYASR   K E N  T + ELAA+  A+  +R Y++     + T+H+ L Y+F     + +  R    +++Y+
Subjt:  YVIYIDASRQGLGCVLMQEGK----VIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYD

Query:  YTIEYHPGKANVVADALSR
        +T+EY  GK N VADALSR
Subjt:  YTIEYHPGKANVVADALSR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy5.6e-3434.12Show/hide
Query:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTR-----------KNAKFEWSDKCEQSFQELKKRLVTT
        V +LG +VS DG   DP+KV+A+  +  P    +VRSFLGL  YY  F++DF+ +A P+T + +           K    E+++    +FQ L+  L + 
Subjt:  VVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTR-----------KNAKFEWSDKCEQSFQELKKRLVTT

Query:  P-ILTPPITGKEYVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDK-CHIFTNHKSLKYIFDQKGLNLRQRR
          IL  P   K + +  DAS  G+G VL QEG+ I   SR L + E NY T++ EL A+V AL   +++L+  +  +IFT+H+ L +    +  N + +R
Subjt:  P-ILTPPITGKEYVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDK-CHIFTNHKSLKYIFDQKGLNLRQRR

Query:  WLELIKDYDYTIEYHPGKANVVADALSRKS-RLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSK
        W   I  ++  + Y PGK N VADALSR++   L++      AT+ SEL       T +++   L  F+ ++ L A    R P   NL    +KS+
Subjt:  WLELIKDYDYTIEYHPGKANVVADALSRKS-RLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.1e-4140.47Show/hide
Query:  FLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCE--QSFQELKKRLVTTPILTPPITGKE
        FLGH+V+ DG+  +P KV+A+V++  P    E+R+FLGLTGYY +F+ +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL  P   K+
Subjt:  FLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCE--QSFQELKKRLVTTPILTPPITGKE

Query:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE
        +V+  DAS   LG VL Q G  I++ SR LN HE NY   + EL A+V A K +RHYL   +  I ++H+ L+++ + K    +  RW   + +Y + I+
Subjt:  YVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIE

Query:  YHPGKANVVADALSR
        Y  GK N VADALSR
Subjt:  YHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus8.0e-4136.53Show/hide
Query:  KDHSNALLEVRISPLALKRANLGAHLGCFRLVDVSLEALYVVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLT
        +D+      +R+   +L +ANL  +L     +D  +E     FLG++V+ADG+  DP+KV A+     P S  E++ FLG+T YY +F++D++++A PLT
Subjt:  KDHSNALLEVRISPLALKRANLGAHLGCFRLVDVSLEALYVVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLT

Query:  TLTR---KNAKFEWSDKCE--------QSFQELKKRLVTTPILTPPITGKEYVIYIDASRQGLGCVLMQE----GKVIAYASRQLNKHECNYPTHDLELA
         LTR    N K   S K          QSF +LK  L ++ IL  P   K + +  DAS   +G VL Q+     + IAY SR LNK E NY T + E+ 
Subjt:  TLTR---KNAKFEWSDKCE--------QSFQELKKRLVTTPILTPPITGKEYVIYIDASRQGLGCVLMQE----GKVIAYASRQLNKHECNYPTHDLELA

Query:  AVVLALKIWRHYLFD-DKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIEYHPGKANVVADALSR
        A++ +L   R YL+      ++T+H+ L +    +  N + +RW   I++Y+  + Y PGK+NVVADALSR
Subjt:  AVVLALKIWRHYLFD-DKCHIFTNHKSLKYIFDQKGLNLRQRRWLELIKDYDYTIEYHPGKANVVADALSR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.3e-1944.33Show/hide
Query:  VVFLG--HVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPP
        + +LG  H++S +GVS DP K+EA+V W  P + TE+R FLGLTGYY RFV+++ ++  PLT L +KN+  +W++    +F+ LK  + T P+L  P
Subjt:  VVFLG--HVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQELKKRLVTTPILTPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTTGCAACGTGGTTCTTTCCTTTTCATCTCATGCCTCCTCCTTGCCATGTATTTTCCTTCCTCACTTGTGGCAACTTCTAGAGCCATACTCGCATTAGTT
CCCGATCCAAAAGTCATAAATGTCGCAACGCCTGCCAGTTTAGCAACATTCAATAAACCACCATCTCAACAGCTAACTGAAGATCATCAGGCATCAACCCAGCCT
CGCACTACCACCTACATAGTTCAGCGTCGCCGTTCGAGTTTGTCGCTGCCGCCTGAGCTCGTTGCACCGTCACCGTCGTCACGTGGGTCTCCTTATCTCCGTGCG
TTTTCGTCTCCGCGCGTTCCCTCTCTGTTCGTGGGTTTCGTGGTTCAAGCTTCCTTTTCCTTGCGTTTTCATCAAGAAAACCTCGTGGCGCCTTCTAAGTGTTGG
ATTGAGTTCAAAACACTTCAACTCGAATGCCCACTGCCCAAGGATCATTCTAACGCGTTGTTAGAGGTTATAATATCCCGTCTAGCGTTGAAACGGGCCAGCTTG
GCGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAACTCGAATGCCCACTACCCAAGGATCATTCTAACGCGTTGTTAGAGGTTAGAATATCCCCTCTAGCG
TTGAAACGGGCCAACTTGGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGATGTTTCCTTGGAAGCACTATATGTAGTGTTCTTAGGGCATGTAGTTTCAGCGGAC
GGAGTGAGTGTTGATCCGCAGAAAGTGGAAGCTGTTGTAAATTGGGAAAGACCAGCTAGTGCAACAGAGGTACGTAGTTTCCTCGGCCTGACCGGATACTACTAT
CGTTTTGTTGAGGATTTCTCACGATTAGCGGTACCCTTGACAACTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCGGATAAATGCGAACAGAGTTTCCAGGAG
CTGAAGAAGAGATTAGTGACAACACCTATTCTGACACCTCCTATAACAGGGAAAGAGTATGTGATCTATATTGACGCTTCGAGGCAAGGATTAGGTTGTGTGCTT
ATGCAAGAAGGAAAGGTAATAGCTTATGCTTCAAGGCAGTTGAATAAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTG
AAGATCTGGAGACATTATTTATTTGATGACAAGTGCCACATTTTCACAAATCATAAGAGTTTGAAGTATATCTTTGATCAGAAAGGGCTGAATTTGAGGCAGAGG
CGATGGCTAGAACTAATCAAAGACTATGACTATACAATAGAATATCATCCGGGTAAGGCTAACGTGGTAGCAGATGCGTTAAGTAGGAAGTCGAGACTTTTGAAG
AGTGCCTTGTATGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTCAAGGCGGTTGTGACTGCAAAAAGCTCAGGGAGTCTTTTAGCTCAATTTCAGGTT
AGGCTTTCTCTAGTAGCAGAGATTGTGAGAAGACAGCCAGAGGATAGTAACTTACAGAAAATGCTTGCAAAGTCCAAGCAAGGCCCAGAGGCAGAATGTGAGTTG
AGAGCAGATGGAGCCATAGTTAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTTTGCAACGTGGTTCTTTCCTTTTCATCTCATGCCTCCTCCTTGCCATGTATTTTCCTTCCTCACTTGTGGCAACTTCTAGAGCCATACTCGCATTAGTT
CCCGATCCAAAAGTCATAAATGTCGCAACGCCTGCCAGTTTAGCAACATTCAATAAACCACCATCTCAACAGCTAACTGAAGATCATCAGGCATCAACCCAGCCT
CGCACTACCACCTACATAGTTCAGCGTCGCCGTTCGAGTTTGTCGCTGCCGCCTGAGCTCGTTGCACCGTCACCGTCGTCACGTGGGTCTCCTTATCTCCGTGCG
TTTTCGTCTCCGCGCGTTCCCTCTCTGTTCGTGGGTTTCGTGGTTCAAGCTTCCTTTTCCTTGCGTTTTCATCAAGAAAACCTCGTGGCGCCTTCTAAGTGTTGG
ATTGAGTTCAAAACACTTCAACTCGAATGCCCACTGCCCAAGGATCATTCTAACGCGTTGTTAGAGGTTATAATATCCCGTCTAGCGTTGAAACGGGCCAGCTTG
GCGCCGTCTAAGTGTTCGATTGAGTTCGAAACACTTCAACTCGAATGCCCACTACCCAAGGATCATTCTAACGCGTTGTTAGAGGTTAGAATATCCCCTCTAGCG
TTGAAACGGGCCAACTTGGGAGCTCATCTTGGCTGCTTTAGGCTTGTTGATGTTTCCTTGGAAGCACTATATGTAGTGTTCTTAGGGCATGTAGTTTCAGCGGAC
GGAGTGAGTGTTGATCCGCAGAAAGTGGAAGCTGTTGTAAATTGGGAAAGACCAGCTAGTGCAACAGAGGTACGTAGTTTCCTCGGCCTGACCGGATACTACTAT
CGTTTTGTTGAGGATTTCTCACGATTAGCGGTACCCTTGACAACTTTGACAAGGAAGAATGCTAAGTTTGAGTGGTCGGATAAATGCGAACAGAGTTTCCAGGAG
CTGAAGAAGAGATTAGTGACAACACCTATTCTGACACCTCCTATAACAGGGAAAGAGTATGTGATCTATATTGACGCTTCGAGGCAAGGATTAGGTTGTGTGCTT
ATGCAAGAAGGAAAGGTAATAGCTTATGCTTCAAGGCAGTTGAATAAGCATGAGTGTAATTACCCTACCCATGATCTTGAGCTAGCAGCAGTTGTTTTAGCACTG
AAGATCTGGAGACATTATTTATTTGATGACAAGTGCCACATTTTCACAAATCATAAGAGTTTGAAGTATATCTTTGATCAGAAAGGGCTGAATTTGAGGCAGAGG
CGATGGCTAGAACTAATCAAAGACTATGACTATACAATAGAATATCATCCGGGTAAGGCTAACGTGGTAGCAGATGCGTTAAGTAGGAAGTCGAGACTTTTGAAG
AGTGCCTTGTATGGTATTCGAGCAACCTTGCTAAGTGAGTTAAGAGGTTTCAAGGCGGTTGTGACTGCAAAAAGCTCAGGGAGTCTTTTAGCTCAATTTCAGGTT
AGGCTTTCTCTAGTAGCAGAGATTGTGAGAAGACAGCCAGAGGATAGTAACTTACAGAAAATGCTTGCAAAGTCCAAGCAAGGCCCAGAGGCAGAATGTGAGTTG
AGAGCAGATGGAGCCATAGTTAAGTAG
Protein sequenceShow/hide protein sequence
MSLQRGSFLFISCLLLAMYFPSSLVATSRAILALVPDPKVINVATPASLATFNKPPSQQLTEDHQASTQPRTTTYIVQRRRSSLSLPPELVAPSPSSRGSPYLRA
FSSPRVPSLFVGFVVQASFSLRFHQENLVAPSKCWIEFKTLQLECPLPKDHSNALLEVIISRLALKRASLAPSKCSIEFETLQLECPLPKDHSNALLEVRISPLA
LKRANLGAHLGCFRLVDVSLEALYVVFLGHVVSADGVSVDPQKVEAVVNWERPASATEVRSFLGLTGYYYRFVEDFSRLAVPLTTLTRKNAKFEWSDKCEQSFQE
LKKRLVTTPILTPPITGKEYVIYIDASRQGLGCVLMQEGKVIAYASRQLNKHECNYPTHDLELAAVVLALKIWRHYLFDDKCHIFTNHKSLKYIFDQKGLNLRQR
RWLELIKDYDYTIEYHPGKANVVADALSRKSRLLKSALYGIRATLLSELRGFKAVVTAKSSGSLLAQFQVRLSLVAEIVRRQPEDSNLQKMLAKSKQGPEAECEL
RADGAIVK