CuGenDBv2

Gene ID	Lag0011257
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase
Genome location	chr1:19157679..19158581
RNA-Seq Expression	Lag0011257
Synteny	Lag0011257
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.3e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

KAA0037805.1 uncharacterized protein E6C27_scaffold918G00190 [Cucumis melo var. makuwa]

6.0e-78

83.89

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Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE SV E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.3e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]

2.3e-77

85.56

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSIIARR+DARTLDWQTFRGIFEEKYYP TYCEAKRDEFLELKQ SLSV +YERKYTELSR AE+IVASESDRCHRFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKW NFSQLVETALRV+QSI EE S  E SRG  T SG RG EQRRFT GVNVSG QDFKRRSGG+  RQMSSGSAYQR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

TYK06334.1 putative polyprotein [Cucumis melo var. makuwa]

2.3e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

1.1e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

A0A5A7T8K4 Retrotrans_gag domain-containing protein

2.9e-78

83.89

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Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE SV E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

A0A5A7U2V7 Reverse transcriptase

1.1e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

A0A5D3BHI1 Reverse transcriptase

1.1e-77

83.33

Show/hide

Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

A0A5D3BS67 Reverse transcriptase

1.1e-77

83.33

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Query:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA
        ++KEAEGWWKSI+ARRSDAR LDWQTFRGIFE+KYYP+TYCEAKRDEFL LKQGSLSV EYERKYTELSR A+VI+ASESDRC RFERGLRFEIRTPVTA
Subjt:  VRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTA

Query:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR
        IAKWTNFSQLVETALRVEQSITEE S  E SRG  TASGFRG EQRRFT G+N+S RQDFK RSGGQ SR +S GS +QR
Subjt:  IAKWTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAAGTTAGAAAGGAGGCAGAGGGATGGTGGAAATCCATTATAGCCAGGCGCAGTGATGCACGTACGCTAGATTGGCAGACATTCAGAGGCATATTTGAGGAA
AAGTACTATCCCGCCACATATTGTGAGGCAAAAAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGTCGAGTACGAGAGGAAGTATACCGAGCTT
TCACGGAATGCTGAAGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTTGAGAGAGGGCTACGTTTTGAGATACGTACCCCAGTTACCGCAATTGCCAAG
TGGACGAATTTTTCCCAGCTAGTAGAGACTGCCTTACGTGTGGAGCAGAGTATTACAGAGGAAAATTCGGTTGCAGAGCCTAGTCGTGGAGCTCCAACAGCTAGT
GGTTTTCGAGGTGGTGAGCAGCGGAGGTTCACACATGGAGTGAATGTTTCAGGTCGTCAAGACTTCAAGCGTCGATCTGGTGGCCAGTTATCGAGGCAGATGAGT
TCAGGTAGTGCCTATCAAAGGTAG

mRNA sequence

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Protein sequence

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MKVRKEAEGWWKSIIARRSDARTLDWQTFRGIFEEKYYPATYCEAKRDEFLELKQGSLSVVEYERKYTELSRNAEVIVASESDRCHRFERGLRFEIRTPVTAIAK
WTNFSQLVETALRVEQSITEENSVAEPSRGAPTASGFRGGEQRRFTHGVNVSGRQDFKRRSGGQLSRQMSSGSAYQR

Lag0011257 (gene) of Sponge gourd (AG-4) v1 genome