; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011279 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011279
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr1:19859737..19862032
RNA-Seq ExpressionLag0011279
SyntenyLag0011279
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL77781.1 hypothetical protein [Colocasia esculenta]6.7e-1534.17Show/hide
Query:  DRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLKD
        D   D  RKK R + +   R  P   F  YTP ++  EQIL EI N   LR  ++M++ P  RD++++C FH+DH H T  C QLKDEIE LI+RG+L  
Subjt:  DRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLKD

Query:  FVEDKSKKRPRPTRDDRGWGGHV--FPSHTNLSLVARESQVPSQQSSSQASY-RRLCLLQHPYKTFFCLYTKESLILPNPLPPNPLDFTENRFNAFSDQ
        FV    +   RP R DR     +   P+   ++++A    V  + + S+  Y RR+ ++  P           S   P P P +P          FSD+
Subjt:  FVEDKSKKRPRPTRDDRGWGGHV--FPSHTNLSLVARESQVPSQQSSSQASY-RRLCLLQHPYKTFFCLYTKESLILPNPLPPNPLDFTENRFNAFSDQ

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]6.7e-1545.37Show/hide
Query:  DQDRDKDHHRKK-RRTHNNDRG-REDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG
        DQ R++   + +  R    DR  ++DP  KF+KYT T++P EQ+LMEI N  LL+   +M  S   R K ++CLFH DH H T++C  LK+E+E LI RG
Subjt:  DQDRDKDHHRKK-RRTHNNDRG-REDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG

Query:  FLKDFVED
        +LK++VE+
Subjt:  FLKDFVED

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]4.2e-1745.71Show/hide
Query:  QDRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLK
        ++R  D  +  R    +   ++DP  KF+KYTPT++P EQ+LMEI +  LL+   +MK S   R K ++CLFH+DH H T++C  LK+E+E LIRRG+LK
Subjt:  QDRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLK

Query:  DFVED
        ++VE+
Subjt:  DFVED

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]6.1e-1641.41Show/hide
Query:  DQDRDKDHHRK-KRRTHNNDR--GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRR
        DQ R++   +    +    DR  G++D   KF+KYTPT++P EQ+LMEI +  LL+    MK  P  R K ++CLFH+DH H T +C  LK+E+E LIR+
Subjt:  DQDRDKDHHRK-KRRTHNNDR--GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRR

Query:  GFLKDFVED------KSKKRPRPTRDDR
        G+LK++V+D      +      PTR+ R
Subjt:  GFLKDFVED------KSKKRPRPTRDDR

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]4.0e-1544.44Show/hide
Query:  DQDRDKDHHRKK-RRTHNNDR-GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG
        DQ R++   + +  R    DR  ++DP  KF+KYTPT++P EQ+LMEI +  LL+   +MK     R K ++CLFH+DH H T++   LK+E+E LIRRG
Subjt:  DQDRDKDHHRKK-RRTHNNDR-GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG

Query:  FLKDFVED
        +L+++VE+
Subjt:  FLKDFVED

TrEMBL top hitse value%identityAlignment
A0A2N9G087 Retrotrans_gag domain-containing protein4.0e-1340.91Show/hide
Query:  PMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLKDFVEDKSKKRP
        P  KF  +TP + P +++LM+I N   LR   K+++ P  R K+ +C FH+DHRH T +C+ LK+++ETL+R+G L+ +V   +  RP
Subjt:  PMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLKDFVEDKSKKRP

A0A6J1CNT2 uncharacterized protein LOC1110128053.3e-1545.37Show/hide
Query:  DQDRDKDHHRKK-RRTHNNDRG-REDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG
        DQ R++   + +  R    DR  ++DP  KF+KYT T++P EQ+LMEI N  LL+   +M  S   R K ++CLFH DH H T++C  LK+E+E LI RG
Subjt:  DQDRDKDHHRKK-RRTHNNDRG-REDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG

Query:  FLKDFVED
        +LK++VE+
Subjt:  FLKDFVED

A0A6J1DWY0 uncharacterized protein LOC1110252932.0e-1745.71Show/hide
Query:  QDRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLK
        ++R  D  +  R    +   ++DP  KF+KYTPT++P EQ+LMEI +  LL+   +MK S   R K ++CLFH+DH H T++C  LK+E+E LIRRG+LK
Subjt:  QDRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGFLK

Query:  DFVED
        ++VE+
Subjt:  DFVED

A0A6J1DYL6 uncharacterized protein LOC1110257851.9e-1544.44Show/hide
Query:  DQDRDKDHHRKK-RRTHNNDR-GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG
        DQ R++   + +  R    DR  ++DP  KF+KYTPT++P EQ+LMEI +  LL+   +MK     R K ++CLFH+DH H T++   LK+E+E LIRRG
Subjt:  DQDRDKDHHRKK-RRTHNNDR-GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRG

Query:  FLKDFVED
        +L+++VE+
Subjt:  FLKDFVED

A0A6J1DZ52 uncharacterized protein LOC1110256123.0e-1641.41Show/hide
Query:  DQDRDKDHHRK-KRRTHNNDR--GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRR
        DQ R++   +    +    DR  G++D   KF+KYTPT++P EQ+LMEI +  LL+    MK  P  R K ++CLFH+DH H T +C  LK+E+E LIR+
Subjt:  DQDRDKDHHRK-KRRTHNNDR--GREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRR

Query:  GFLKDFVED------KSKKRPRPTRDDR
        G+LK++V+D      +      PTR+ R
Subjt:  GFLKDFVED------KSKKRPRPTRDDR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACAAGAATTAGAAAAACATTCATTATATGATCAAGACAGAGACAAGGACCACCACCGCAAAAAACGGAGAACACATAACAATGATCGAGGGCGAGAAGACCCCAT
GGGTAAATTCAAGAAATACACCCCCACTTCCATCCCGCAGGAGCAAATATTGATGGAGATTACAAATACAAATCTTCTGAGACATTCTCGAAAAATGAAAACAAGTCCAG
AAGGAAGAGATAAAAGCCAGTTTTGTCTTTTCCACAAGGACCACAGACACACTACCAGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGCTGATTCGTCGTGGATTC
CTCAAAGATTTTGTCGAAGACAAGAGTAAAAAAAGGCCGAGGCCGACCAGAGATGACCGAGGCTGGGGAGGTCACGTCTTCCCCTCTCATACAAATTTATCGTTGGTGGC
ACGTGAAAGTCAGGTGCCATCTCAGCAATCCTCCTCACAAGCTTCATACCGGCGTCTATGTCTACTCCAGCATCCTTATAAGACCTTCTTTTGCCTCTACACAAAAGAAA
GTCTAATCCTCCCAAATCCTCTACCTCCAAATCCTCTAGATTTTACAGAAAATCGATTCAATGCATTTTCGGACCAACGAACGCATAAAAACGTCTGGGTGGGATTCGAT
TTCGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACACAAGAATTAGAAAAACATTCATTATATGATCAAGACAGAGACAAGGACCACCACCGCAAAAAACGGAGAACACATAACAATGATCGAGGGCGAGAAGACCCCAT
GGGTAAATTCAAGAAATACACCCCCACTTCCATCCCGCAGGAGCAAATATTGATGGAGATTACAAATACAAATCTTCTGAGACATTCTCGAAAAATGAAAACAAGTCCAG
AAGGAAGAGATAAAAGCCAGTTTTGTCTTTTCCACAAGGACCACAGACACACTACCAGAAATTGCATCCAGCTTAAAGATGAGATTGAAACGCTGATTCGTCGTGGATTC
CTCAAAGATTTTGTCGAAGACAAGAGTAAAAAAAGGCCGAGGCCGACCAGAGATGACCGAGGCTGGGGAGGTCACGTCTTCCCCTCTCATACAAATTTATCGTTGGTGGC
ACGTGAAAGTCAGGTGCCATCTCAGCAATCCTCCTCACAAGCTTCATACCGGCGTCTATGTCTACTCCAGCATCCTTATAAGACCTTCTTTTGCCTCTACACAAAAGAAA
GTCTAATCCTCCCAAATCCTCTACCTCCAAATCCTCTAGATTTTACAGAAAATCGATTCAATGCATTTTCGGACCAACGAACGCATAAAAACGTCTGGGTGGGATTCGAT
TTCGGCTGA
Protein sequenceShow/hide protein sequence
MTQELEKHSLYDQDRDKDHHRKKRRTHNNDRGREDPMGKFKKYTPTSIPQEQILMEITNTNLLRHSRKMKTSPEGRDKSQFCLFHKDHRHTTRNCIQLKDEIETLIRRGF
LKDFVEDKSKKRPRPTRDDRGWGGHVFPSHTNLSLVARESQVPSQQSSSQASYRRLCLLQHPYKTFFCLYTKESLILPNPLPPNPLDFTENRFNAFSDQRTHKNVWVGFD
FG