; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011307 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011307
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:20682020..20683456
RNA-Seq ExpressionLag0011307
SyntenyLag0011307
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060399.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-2693.65Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARGG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
KAA0062886.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-2695.08Show/hide
Query:  RLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGP+NVKARGG
Subjt:  RLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
KAA0066736.1 gag/pol protein [Cucumis melo var. makuwa]7.3e-2795.24Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
KAA0067493.1 gag/pol protein [Cucumis melo var. makuwa]4.7e-2695.16Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
TYK02509.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2695.16Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
TrEMBL top hitse value%identityAlignment
A0A5A7TCQ9 Gag/pol protein2.3e-2692.06Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        I RLVKNGL++KLE+DSLPPCESCLEGKMTKRPF GKGYRAKEPLELIHSDLCGPMNVKARGG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
A0A5A7V3R3 Gag/pol protein1.0e-2693.65Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARGG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
A0A5A7VHC8 Gag/pol protein2.3e-2695.16Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
A0A5D3BWL2 Gag/pol protein1.7e-2695.16Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARG
A0A5D3DWJ5 Gag/pol protein3.5e-2795.24Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        I RLVKNGLL+KLE+DSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.3e-0636.67Show/hide
Query:  LVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
        L K  L+S  +  ++ PC+ CL GK  +  F     R    L+L++SD+CGPM +++ GG
Subjt:  LVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGG
P93293 Uncharacterized mitochondrial protein AtMg003004.0e-0437.93Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
        ++ LVK G L   +  SL  CE C+ GK  +  F+   +  K PL+ +HSDL G  +V
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
Arabidopsis top hitse value%identityAlignment
ATMG00300.1 Gag-Pol-related retrotransposon family protein2.9e-0537.93Show/hide
Query:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV
        ++ LVK G L   +  SL  CE C+ GK  +  F+   +  K PL+ +HSDL G  +V
Subjt:  IDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGATCGTTTGGTAAAGAATGGACTTCTAAGCAAGTTAGAAGAGGATTCACTACCACCTTGTGAATCTTGTCTCGAGGGAAAAATGACCAAGAGACCCTTTACTGG
AAAAGGTTACAGAGCCAAAGAACCCTTAGAGTTAATACATTCGGATCTATGTGGTCCAATGAATGTAAAAGCTCGAGGAGGCCCCCGAACCCCCATCGGACGCTTCGCCC
CTGGACCCCGACTCGCTGACCTGTCAGCGAGACCCCCGTACTTGGTCATTCGAAGTGCTCCATTCCAGTTAGGGAAGAGGCTAGGGTCGGCCTCAGCCTCAAGCCCCAGC
CCAGGCTCGCCTGATGTGAAGATGCTCATGGCAGATGAGATGAGGGGAGGTAGACTCGTTGGTCCAAGCTCACGTAATCTCAATCTGGATGAGGCGAGGCTCAGCCGTCC
AGGCTTGCATGATGTGACGATGCTCAAGCCAGATGAAATGAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCGATCGTTTGGTAAAGAATGGACTTCTAAGCAAGTTAGAAGAGGATTCACTACCACCTTGTGAATCTTGTCTCGAGGGAAAAATGACCAAGAGACCCTTTACTGG
AAAAGGTTACAGAGCCAAAGAACCCTTAGAGTTAATACATTCGGATCTATGTGGTCCAATGAATGTAAAAGCTCGAGGAGGCCCCCGAACCCCCATCGGACGCTTCGCCC
CTGGACCCCGACTCGCTGACCTGTCAGCGAGACCCCCGTACTTGGTCATTCGAAGTGCTCCATTCCAGTTAGGGAAGAGGCTAGGGTCGGCCTCAGCCTCAAGCCCCAGC
CCAGGCTCGCCTGATGTGAAGATGCTCATGGCAGATGAGATGAGGGGAGGTAGACTCGTTGGTCCAAGCTCACGTAATCTCAATCTGGATGAGGCGAGGCTCAGCCGTCC
AGGCTTGCATGATGTGACGATGCTCAAGCCAGATGAAATGAGGTAG
Protein sequenceShow/hide protein sequence
MIDRLVKNGLLSKLEEDSLPPCESCLEGKMTKRPFTGKGYRAKEPLELIHSDLCGPMNVKARGGPRTPIGRFAPGPRLADLSARPPYLVIRSAPFQLGKRLGSASASSPS
PGSPDVKMLMADEMRGGRLVGPSSRNLNLDEARLSRPGLHDVTMLKPDEMR