CuGenDBv2

Gene ID	Lag0011311
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNase H domain-containing protein
Genome location	chr1:20978815..20979381
RNA-Seq Expression	Lag0011311
Synteny	Lag0011311
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits

e value

%identity

Alignment

KJB11692.1 hypothetical protein B456_001G272100 [Gossypium raimondii]

1.4e-08

30.6

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H D ++    S+ + G+V  D RG+L+A + +     +SPL AE    LEG++L   L +  + ++ DS ++I    +    ++ I A I DI+  ++ 
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ + FQYI R  N  AHR+A++        +L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

MBA0729380.1 hypothetical protein [Gossypium laxum]

1.8e-08

30.6

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H DT+F         G+V  D+ G+L+  +T+ +L  +S   AE    L  ++L   +    +TI  DS ++I      V+ +  I A I DI+     
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ++ FQ+I+R  N LAHR+A+  L     ++L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

MBA0733287.1 hypothetical protein [Gossypium gossypioides]

1.2e-09

33.58

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H D ++    S+ + G+V  D RGILVA +T+      SP  AE    LEG++L   L +  + ++ DS ++I    +    +++I A I DI+  +T 
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ + FQYI R  N  AHR+A++ L      +L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

MBA0733324.1 hypothetical protein [Gossypium gossypioides]

6.8e-08

34.78

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Query:  EDMIMHTDTSFKGAQSACSIGIVFHDKRG-ILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIK
        ED I H D +F   +S  + G++  D+RG + V+  TL+S VS SP  AE +  L+ ++L   L +R +TI  DS ++I     IV  ++ I A I DIK
Subjt:  EDMIMHTDTSFKGAQSACSIGIVFHDKRG-ILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIK

Query:  TSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASNSWL
        +  +  Q++ FQ+I +  N  AH++A+  L +    +L
Subjt:  TSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASNSWL

XP_024950112.1 uncharacterized protein LOC112496847 [Citrus sinensis]

3.0e-08

33.09

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        ++ D +F     +  +G V  D  G +VAA    +L+  S   AE   VL G++LAR  +V  L I  D + ++  +N+     + I  TI  I+     
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASN-SWLQNFPA
        FQKV   +I R  N  AH LA++ L   S   WL N PA
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASN-SWLQNFPA

TrEMBL top hits

e value

%identity

Alignment

A0A0D2M3V7 RNase H domain-containing protein

6.6e-09

30.6

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H D ++    S+ + G+V  D RG+L+A + +     +SPL AE    LEG++L   L +  + ++ DS ++I    +    ++ I A I DI+  ++ 
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ + FQYI R  N  AHR+A++        +L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

A0A1U8IZI0 uncharacterized protein LOC107900161

4.3e-08

29.85

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H D ++    S+ +  +V  D RG+L+A +T+      SP  AE    LEG++L   L +  + ++ DS ++I    +    ++ I A I DI+  ++ 
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ + FQYI R  N  AHR+A++        +L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

A0A7J9AZD2 RNase H domain-containing protein

8.6e-09

30.6

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H DT+F         G+V  D+ G+L+  +T+ +L  +S   AE    L  ++L   +    +TI  DS ++I      V+ +  I A I DI+     
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ++ FQ+I+R  N LAHR+A+  L     ++L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

A0A7J9BAA2 Uncharacterized protein (Fragment)

6.0e-10

33.58

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Query:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS
        +H D ++    S+ + G+V  D RGILVA +T+      SP  AE    LEG++L   L +  + ++ DS ++I    +    +++I A I DI+  +T 
Subjt:  MHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTS

Query:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ
        FQ + FQYI R  N  AHR+A++ L      +L+
Subjt:  FQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQ

A0A7J9BCI1 RNase H domain-containing protein

3.3e-08

34.78

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Query:  EDMIMHTDTSFKGAQSACSIGIVFHDKRG-ILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIK
        ED I H D +F   +S  + G++  D+RG + V+  TL+S VS SP  AE +  L+ ++L   L +R +TI  DS ++I     IV  ++ I A I DIK
Subjt:  EDMIMHTDTSFKGAQSACSIGIVFHDKRG-ILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIK

Query:  TSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASNSWL
        +  +  Q++ FQ+I +  N  AH++A+  L +    +L
Subjt:  TSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASNSWL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G10000.1 Ribonuclease H-like superfamily protein

1.3e-04

26.28

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Query:  DMIMHTDTSFKGAQSACSIGIVF----HDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWD
        D + + D +++   S    G VF    H ++ I   +         SPL AE   +   M  A +L    L +L DS S+++ +N  V     I   + +
Subjt:  DMIMHTDTSFKGAQSACSIGIVF----HDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWD

Query:  IKTSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASN
        I++ +  F+ ++FQ+I R  N +A   A+L L  + N
Subjt:  IKTSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASN

AT3G09510.1 Ribonuclease H-like superfamily protein

2.2e-04

25.71

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Query:  DTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTSFQK
        D  F   +   + G +  +  G  ++  ++    +++PL AE   +L  ++        ++ +  D  +LIN IN I    +S+A  + DI      F  
Subjt:  DTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQGEASIAATIWDIKTSQTSFQK

Query:  VNFQYISRRFNGLAHRLARLG-LFSASNSWLQNFPAWMER
        + F +I R+ N LAH LA+ G  +S   S   + P W++R
Subjt:  VNFQYISRRFNGLAHRLARLG-LFSASNSWLQNFPAWMER

Sequences

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CDS sequence

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ATGAAGGCTAACCCAAAAGGTGGTCCTTGTGTTCAAACTGAGGAAGATATAGTTAATCTTATCTCAAACGGTGAAGATATGATTATGCACACTGACACGTCTTTTAAAGG
AGCTCAGAGTGCTTGTAGCATTGGTATTGTTTTTCATGATAAAAGGGGAATTCTTGTGGCGGCGCAGACTCTATATTCTCTAGTGAGCAATTCTCCTTTGGGAGCGGAAG
AGGTTGGAGTGCTAGAAGGGATGCGTCTGGCCAGGAAGTTAAATGTGAGACGACTAACTATTTTGTTGGACTCCATGTCTCTAATAAATACAATTAATGATATTGTACAG
GGGGAAGCCAGTATTGCTGCGACCATATGGGACATTAAAACAAGTCAAACATCTTTTCAGAAAGTTAATTTCCAGTATATTAGTCGTAGATTCAACGGTCTGGCACATAG
ATTGGCAAGATTAGGGCTATTTTCTGCGTCTAATTCGTGGCTACAAAACTTTCCTGCATGGATGGAAAGAGTATCGTTTAAAGAACGATCGTTATTTGTACCCCATTGGG
GATCTTTTGTTTTATGA

mRNA sequence

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Protein sequence

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MKANPKGGPCVQTEEDIVNLISNGEDMIMHTDTSFKGAQSACSIGIVFHDKRGILVAAQTLYSLVSNSPLGAEEVGVLEGMRLARKLNVRRLTILLDSMSLINTINDIVQ
GEASIAATIWDIKTSQTSFQKVNFQYISRRFNGLAHRLARLGLFSASNSWLQNFPAWMERVSFKERSLFVPHWGSFVL

Lag0011311 (gene) of Sponge gourd (AG-4) v1 genome