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Lag0011325 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011325
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr1:21516462..21517064
RNA-Seq ExpressionLag0011325
SyntenyLag0011325
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032339.1 gag/pol protein [Cucumis melo var. makuwa]1.6e-2050.86Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG    Q+   A+K V+ ARM++   +REHVLNM   FN+VE NG V  E++Q      GK        K KAK VA KGKCFHCN++ HWKRNC +Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRENEDKYDLLVL
        A+ K+E E KYDLL+L
Subjt:  AEDKRENEDKYDLLVL

KAA0041208.1 gag/pol protein [Cucumis melo var. makuwa]4.0e-1950.94Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG PS  +  EA+K V++ARM++G  +REHVL+M   FNI E NG        K+KG  GK P   V  K KAK VA KGKCFHCN+  HWK+NC +Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRE
        A+ K +
Subjt:  AEDKRE

KAA0041279.1 gag/pol protein [Cucumis melo var. makuwa]6.2e-2041.56Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN--------------------------------------QKKKGDNGK
        MFG  S Q+  EA+K +++ARM++G  +REHVLNM   FN+ + NG V  E++                                      QK+KG  GK
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN--------------------------------------QKKKGDNGK

Query:  APAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLLVL
         P      KRKA  VA KGK +H NVD HWKRNCP+Y+A+ K+E E KYDLLVL
Subjt:  APAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLLVL

KAA0042123.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-2143.36Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN-----------------------------QKKKGDNGKAPAKVVLDK
        +FG  S Q+  EA+K V++ RM++   IREHVLNM   FN+VE NG V  E++                             QK+KG  GK P     DK
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN-----------------------------QKKKGDNGKAPAKVVLDK

Query:  RKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLL
         KAKVV  KGKCFHCNVD HWKRNCP+Y+A+ KR+    +  L
Subjt:  RKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLL

KAA0058181.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-1845.37Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG  SYQ+ H+ALK +++ARM +G  +REHVLNM   FN+ E NG V+ E  +K                   K  A KG CFHCN + HWKRNCP+Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRENE
        AE K+  +
Subjt:  AEDKRENE

TrEMBL top hitse value%identityAlignment
A0A5A7SSX5 Gag/pol protein7.9e-2150.86Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG    Q+   A+K V+ ARM++   +REHVLNM   FN+VE NG V  E++Q      GK        K KAK VA KGKCFHCN++ HWKRNC +Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRENEDKYDLLVL
        A+ K+E E KYDLL+L
Subjt:  AEDKRENEDKYDLLVL

A0A5A7TE24 Gag/pol protein1.9e-1950.94Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG PS  +  EA+K V++ARM++G  +REHVL+M   FNI E NG        K+KG  GK P   V  K KAK VA KGKCFHCN+  HWK+NC +Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRE
        A+ K +
Subjt:  AEDKRE

A0A5A7TFX6 Gag/pol protein7.1e-2243.36Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN-----------------------------QKKKGDNGKAPAKVVLDK
        +FG  S Q+  EA+K V++ RM++   IREHVLNM   FN+VE NG V  E++                             QK+KG  GK P     DK
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN-----------------------------QKKKGDNGKAPAKVVLDK

Query:  RKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLL
         KAKVV  KGKCFHCNVD HWKRNCP+Y+A+ KR+    +  L
Subjt:  RKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLL

A0A5A7TIU9 Gag/pol protein3.0e-2041.56Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN--------------------------------------QKKKGDNGK
        MFG  S Q+  EA+K +++ARM++G  +REHVLNM   FN+ + NG V  E++                                      QK+KG  GK
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERN--------------------------------------QKKKGDNGK

Query:  APAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLLVL
         P      KRKA  VA KGK +H NVD HWKRNCP+Y+A+ K+E E KYDLLVL
Subjt:  APAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDKYDLLVL

A0A5A7UXG8 Gag/pol protein1.3e-1845.37Show/hide
Query:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV
        MFG  SYQ+ H+ALK +++ARM +G  +REHVLNM   FN+ E NG V+ E  +K                   K  A KG CFHCN + HWKRNCP+Y+
Subjt:  MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYV

Query:  AEDKRENE
        AE K+  +
Subjt:  AEDKRENE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGGATTACCATCTTATCAGCTCCACCACGAAGCTCTGAAAAATGTTTTCGACGCCCGCATGGAAGATGGGTATCCTATTCGGGAACACGTTCTCAACATGACGAA
CCAATTCAACATTGTGGAGTCTAATGGGGGGGTCGTTTGCGAGAGGAATCAGAAGAAGAAGGGTGACAATGGGAAGGCTCCTGCTAAGGTTGTACTGGACAAGAGAAAGG
CCAAGGTCGTGGCCGATAAGGGCAAGTGCTTCCACTGCAATGTGGATAGTCACTGGAAGAGGAACTGCCCTCGTTACGTTGCTGAGGATAAGAGAGAAAATGAAGATAAA
TATGATTTACTTGTTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGGATTACCATCTTATCAGCTCCACCACGAAGCTCTGAAAAATGTTTTCGACGCCCGCATGGAAGATGGGTATCCTATTCGGGAACACGTTCTCAACATGACGAA
CCAATTCAACATTGTGGAGTCTAATGGGGGGGTCGTTTGCGAGAGGAATCAGAAGAAGAAGGGTGACAATGGGAAGGCTCCTGCTAAGGTTGTACTGGACAAGAGAAAGG
CCAAGGTCGTGGCCGATAAGGGCAAGTGCTTCCACTGCAATGTGGATAGTCACTGGAAGAGGAACTGCCCTCGTTACGTTGCTGAGGATAAGAGAGAAAATGAAGATAAA
TATGATTTACTTGTTTTATAA
Protein sequenceShow/hide protein sequence
MFGLPSYQLHHEALKNVFDARMEDGYPIREHVLNMTNQFNIVESNGGVVCERNQKKKGDNGKAPAKVVLDKRKAKVVADKGKCFHCNVDSHWKRNCPRYVAEDKRENEDK
YDLLVL