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Lag0011377 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011377
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionATP-dependent DNA helicase At3g02060, chloroplastic
Genome locationchr1:23196798..23197507
RNA-Seq ExpressionLag0011377
SyntenyLag0011377
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0004386 - helicase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR003711 - CarD-like/TRCF domain
IPR036101 - CarD-like/TRCF domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141422.1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X1 [Momordica charantia]4.6e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
XP_022141424.1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X2 [Momordica charantia]4.6e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
XP_022141425.1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X3 [Momordica charantia]4.6e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
XP_038907244.1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X1 [Benincasa hispida]2.7e-1586.27Show/hide
Query:  DPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        D  G   +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  DPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
XP_038907245.1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X2 [Benincasa hispida]2.7e-1586.27Show/hide
Query:  DPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        D  G   +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  DPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
TrEMBL top hitse value%identityAlignment
A0A6J1CI23 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X32.2e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
A0A6J1CIL1 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X22.2e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
A0A6J1CJT5 ATP-dependent DNA helicase At3g02060, chloroplastic isoform X12.2e-1595.45Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEPIEYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
A0A6J1GZL7 ATP-dependent DNA helicase At3g02060, chloroplastic8.5e-1593.18Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEP EYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
A0A6J1JT22 ATP-dependent DNA helicase At3g02060, chloroplastic8.5e-1593.18Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKG TEP EYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
SwissProt top hitse value%identityAlignment
F4JFJ3 ATP-dependent DNA helicase At3g02060, chloroplastic1.8e-1481.82Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPY+L SGDYVVHKKVGIGRFVGIKFDV K  +EP+EYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
Q2V338 Probable serine/threonine-protein kinase WNK95.0e-0443.14Show/hide
Query:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIK
        M+ LS LE D SE+VEVDPTG+YGR +    +     V++  G   + GI+
Subjt:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIK
Q9CAV6 Serine/threonine-protein kinase WNK11.3e-0452.5Show/hide
Query:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
        M+ LS LEPD SEFVEVDPTG+YGR +    +     V++
Subjt:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
Arabidopsis top hitse value%identityAlignment
AT3G02060.1 DEAD/DEAH box helicase, putative1.3e-1581.82Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPY+L SGDYVVHKKVGIGRFVGIKFDV K  +EP+EYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
AT3G02060.2 DEAD/DEAH box helicase, putative1.3e-1581.82Show/hide
Query:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
        +VDPY+L SGDYVVHKKVGIGRFVGIKFDV K  +EP+EYVFIE
Subjt:  RVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE
AT3G04910.1 with no lysine (K) kinase 19.3e-0652.5Show/hide
Query:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
        M+ LS LEPD SEFVEVDPTG+YGR +    +     V++
Subjt:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
AT3G22420.1 with no lysine (K) kinase 28.7e-0440Show/hide
Query:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
        M+G      DCS FVE+DP+G+YGR D    +     V++
Subjt:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHK
AT5G28080.2 Protein kinase superfamily protein3.5e-0543.14Show/hide
Query:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIK
        M+ LS LE D SE+VEVDPTG+YGR +    +     V++  G   + GI+
Subjt:  MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGTCTCTCAGATCTTGAGCCTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAAATATGGCAGAGTTGATCCTTATACGCTTCGTTCTGGGGATTATGT
TGTGCATAAGAAGGTCGGTATCGGTCGATTCGTTGGAATTAAATTTGATGTTCAGAAGGGTTTTACGGAGCCTATTGAGTATGTGTTCATTGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGGTCTCTCAGATCTTGAGCCTGATTGCTCTGAATTTGTTGAAGTTGATCCCACTGGCAAATATGGCAGAGTTGATCCTTATACGCTTCGTTCTGGGGATTATGT
TGTGCATAAGAAGGTCGGTATCGGTCGATTCGTTGGAATTAAATTTGATGTTCAGAAGGGTTTTACGGAGCCTATTGAGTATGTGTTCATTGAATAG
Protein sequenceShow/hide protein sequence
MDGLSDLEPDCSEFVEVDPTGKYGRVDPYTLRSGDYVVHKKVGIGRFVGIKFDVQKGFTEPIEYVFIE