; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011397 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011397
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr1:23723285..23723674
RNA-Seq ExpressionLag0011397
SyntenyLag0011397
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043321.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-1043Show/hide
Query:  SRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPN-ETSSPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQKS
        SRS+E Q  ++  P    K+  ++++  + E+   EN  + +  SLS++ N E S P++MSVM+TD  TSE+RM E+EKK+NML+K VEE+D++IA  K+
Subjt:  SRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPN-ETSSPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQKS

KAA0066364.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-1041.13Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFT-SLSQQPNETSSPDVMSVMMTDTGTSEERMVE
        MT K  +SK  A S+    R  C+RS+ETQ  ++  P  +A  +  +++   Q EI   EN  + K   S      ET  P++MS M+TD  TS++RM+E
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFT-SLSQQPNETSSPDVMSVMMTDTGTSEERMVE

Query:  VEKKINMLLKMVEEKDYKIASQKS
        ++KKINML+K+V E+DY IAS K+
Subjt:  VEKKINMLLKMVEEKDYKIASQKS

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]1.1e-0938.84Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE
        M +K+ +SK  A+S+ Y G I  SRSK      +Q   IA  +L+++ E  +  I   EN +   + S S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE

Query:  KKINMLLKMVEEKDYKIASQK
        +KIN+L+K+V+E+D++IA+ K
Subjt:  KKINMLLKMVEEKDYKIASQK

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]1.1e-0938.84Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE
        M +K+ +SK  A+S+ Y G I  SRSK      +Q   IA  +L+++ E  +  I   EN +   + S S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE

Query:  KKINMLLKMVEEKDYKIASQK
        +KIN+L+K+V+E+D++IA+ K
Subjt:  KKINMLLKMVEEKDYKIASQK

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.1e-0938.84Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE
        M +K+ +SK  A+S+ Y G I  SRSK      +Q   IA  +L+++ E  +  I   EN +   + S S +  + + PDVMSVMM D    E  M E+E
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVE

Query:  KKINMLLKMVEEKDYKIASQK
        +KIN+L+K+V+E+D++IA+ K
Subjt:  KKINMLLKMVEEKDYKIASQK

TrEMBL top hitse value%identityAlignment
A0A5A7TP10 Ty3-gypsy retrotransposon protein1.8e-1043Show/hide
Query:  SRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPN-ETSSPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQKS
        SRS+E Q  ++  P    K+  ++++  + E+   EN  + +  SLS++ N E S P++MSVM+TD  TSE+RM E+EKK+NML+K VEE+D++IA  K+
Subjt:  SRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPN-ETSSPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQKS

A0A5A7U9H0 Ty3-gypsy retrotransposon protein7.0e-1042.57Show/hide
Query:  SRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQK
        SRS++ Q  ++  P  +AN +  ++++  +  I   EN  + +  SLS++ NE +  P++MSVM+TD  TSE+RM E+EKK+NML+K VEE+D++IAS K
Subjt:  SRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVEVEKKINMLLKMVEEKDYKIASQK

Query:  S
        +
Subjt:  S

A0A5A7UF13 Ty3-gypsy retrotransposon protein7.0e-1040.32Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVE
        MT++  +SK ++          CSR  E Q  ++  P  +A  +  ++++  +  I   EN  + K  SLS+  NE +  P++MSVM+TD  TSE RMVE
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVE

Query:  VEKKINMLLKMVEEKDYKIASQKS
        +EKK+NML+K VEE+D+KIAS K+
Subjt:  VEKKINMLLKMVEEKDYKIASQKS

A0A5D3BS57 Ty3-gypsy retrotransposon protein1.4e-1041.13Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFT-SLSQQPNETSSPDVMSVMMTDTGTSEERMVE
        MT K  +SK  A S+    R  C+RS+ETQ  ++  P  +A  +  +++   Q EI   EN  + K   S      ET  P++MS M+TD  TS++RM+E
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFT-SLSQQPNETSSPDVMSVMMTDTGTSEERMVE

Query:  VEKKINMLLKMVEEKDYKIASQKS
        ++KKINML+K+V E+DY IAS K+
Subjt:  VEKKINMLLKMVEEKDYKIASQKS

E5GBB0 Ty3-gypsy retrotransposon protein7.0e-1040.32Show/hide
Query:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVE
        MT++  +SK ++          CSR  E Q  ++  P  +A  +  ++++  +  I   EN  + K  SLS+  NE +  P++MSVM+TD  TSE RMVE
Subjt:  MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPV-IANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETS-SPDVMSVMMTDTGTSEERMVE

Query:  VEKKINMLLKMVEEKDYKIASQKS
        +EKK+NML+K VEE+D+KIAS K+
Subjt:  VEKKINMLLKMVEEKDYKIASQKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACCAAACAAACTTCTTCAAAGATCGTTGCTTCAAGCAACTTCTATGTGGGGAGAATTATGTGCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCC
TGTCATCGCAAACAAGATGCTGAGACGCATGACAGAATTTGCTCAACTCGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCACCTCTCTTTCTCAGCAACCAA
ATGAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATACAGGAACTAGTGAAGAACGGATGGTTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTT
GAAGAGAAAGACTACAAAATTGCCTCTCAAAAGTCAGATGGAAAGTCGGGATGCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACCAAACAAACTTCTTCAAAGATCGTTGCTTCAAGCAACTTCTATGTGGGGAGAATTATGTGCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCC
TGTCATCGCAAACAAGATGCTGAGACGCATGACAGAATTTGCTCAACTCGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCACCTCTCTTTCTCAGCAACCAA
ATGAAACATCAAGTCCTGATGTGATGTCTGTTATGATGACTGATACAGGAACTAGTGAAGAACGGATGGTTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTT
GAAGAGAAAGACTACAAAATTGCCTCTCAAAAGTCAGATGGAAAGTCGGGATGCCACTGA
Protein sequenceShow/hide protein sequence
MTTKQTSSKIVASSNFYVGRIMCSRSKETQHEDNQTPVIANKMLRRMTEFAQLEIATAENLMLGKFTSLSQQPNETSSPDVMSVMMTDTGTSEERMVEVEKKINMLLKMV
EEKDYKIASQKSDGKSGCH