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Lag0011411 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011411
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription initiation factor TFIID subunit 5
Genome locationchr1:24145636..24150928
RNA-Seq ExpressionLag0011411
SyntenyLag0011411
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2027838.1 hypothetical protein ES319_D05G060200v1, partial [Gossypium barbadense]2.0e-0743.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
KAG4144796.1 hypothetical protein ERO13_D05G060932v2, partial [Gossypium hirsutum]2.0e-0743.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
TYG67262.1 hypothetical protein ES288_D05G064200v1 [Gossypium darwinii]2.0e-0743.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
TYH69577.1 hypothetical protein ES332_D05G065700v1 [Gossypium tomentosum]2.0e-0743.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
XP_022936938.1 transcription initiation factor TFIID subunit 5 isoform X3 [Cucurbita moschata]3.4e-0737.84Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------
        S+ ERLEKA GLLSDSEKAE ETKDGDVDENK                                                                    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------

Query:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
        LS VALPSVS YTFIN HNGL      + I H     DG LV GGF D
Subjt:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
TrEMBL top hitse value%identityAlignment
A0A5D2CGI7 WD_REPEATS_REGION domain-containing protein9.7e-0843.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
A0A5D2KR58 WD_REPEATS_REGION domain-containing protein9.7e-0843.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
A0A5J5R996 WD_REPEATS_REGION domain-containing protein (Fragment)9.7e-0843.75Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG
        S+ ERLEKA GLLSDSEK E E ++GDVDE K                                LS VALPSVS YTF+N +NGL      + I H    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQG

Query:  ADGILVLGGFGD
         DG LV GGF D
Subjt:  ADGILVLGGFGD
A0A6J1IFS3 transcription initiation factor TFIID subunit 5 isoform X31.6e-0737.84Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------
        S+ ERLEKA GLLSDSEKAE ETKDGDVDENK                                                                    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------

Query:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
        LS VALPSVS YTFIN HNGL      + I H     DG LV GGF D
Subjt:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
A0A6J1IMC3 transcription initiation factor TFIID subunit 5 isoform X11.6e-0737.84Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------
        S+ ERLEKA GLLSDSEKAE ETKDGDVDENK                                                                    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------

Query:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
        LS VALPSVS YTFIN HNGL      + I H     DG LV GGF D
Subjt:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGD
SwissProt top hitse value%identityAlignment
Q6S7B0 Transcription initiation factor TFIID subunit 53.5e-0730.92Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------
        S+ +RLEK  GLLSDSEK +GE+KDGD D++K                                                                    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------

Query:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGDRRVE
        LS VA+PSVS YTF+N HNGL      + I H     DG LV GGF D  ++
Subjt:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGDRRVE
Arabidopsis top hitse value%identityAlignment
AT5G25150.1 TBP-associated factor 52.5e-0830.92Show/hide
Query:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------
        S+ +RLEK  GLLSDSEK +GE+KDGD D++K                                                                    
Subjt:  SIRERLEKAVGLLSDSEKAEGETKDGDVDENK--------------------------------------------------------------------

Query:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGDRRVE
        LS VA+PSVS YTF+N HNGL      + I H     DG LV GGF D  ++
Subjt:  LSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGDRRVE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAGCATTCGAGAACGCTTGGAGAAAGCTGTTGGTTTGCTCTCAGATTCTGAAAAGGCCGAGGGAGAAACGAAGGATGGTGATGTAGATGAGAATAAGTTGAGTTT
TGTTGCTCTACCATCAGTCAGTCGTTATACCTTCATTAATGCACACAACGGTTTGGTAGCTCTGTTGTTAGACACTATAATTGGCCATGATCTTCAAGGTGCAGATGGTA
TACTAGTTCTAGGTGGTTTTGGTGATAGAAGAGTGGAAGGAGTTCACGGTGTTCTGAATCCTATGATCAGGCCCTCCGAAGGGATGGTTGCGCCAGGACAACCTGCAGGC
GGATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAGCATTCGAGAACGCTTGGAGAAAGCTGTTGGTTTGCTCTCAGATTCTGAAAAGGCCGAGGGAGAAACGAAGGATGGTGATGTAGATGAGAATAAGTTGAGTTT
TGTTGCTCTACCATCAGTCAGTCGTTATACCTTCATTAATGCACACAACGGTTTGGTAGCTCTGTTGTTAGACACTATAATTGGCCATGATCTTCAAGGTGCAGATGGTA
TACTAGTTCTAGGTGGTTTTGGTGATAGAAGAGTGGAAGGAGTTCACGGTGTTCTGAATCCTATGATCAGGCCCTCCGAAGGGATGGTTGCGCCAGGACAACCTGCAGGC
GGATCATAG
Protein sequenceShow/hide protein sequence
MCSIRERLEKAVGLLSDSEKAEGETKDGDVDENKLSFVALPSVSRYTFINAHNGLVALLLDTIIGHDLQGADGILVLGGFGDRRVEGVHGVLNPMIRPSEGMVAPGQPAG
GS