CuGenDBv2

Gene ID	Lag0011430
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr1:24585187..24588565
RNA-Seq Expression	Lag0011430
Synteny	Lag0011430
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR002885 - Pentatricopeptide repeat IPR011990 - Tetratricopeptide-like helical domain superfamily IPR044657 - Pentatricopeptide repeat-containing protein NFD5-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6598456.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

KAG7029395.1 Pentatricopeptide repeat-containing protein [Cucurbita argyrosperma subsp. argyrosperma]

2.8e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

XP_022961855.1 putative pentatricopeptide repeat-containing protein At2g02150 [Cucurbita moschata]

2.8e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

XP_022996674.1 putative pentatricopeptide repeat-containing protein At2g02150 [Cucurbita maxima]

2.8e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

XP_023546012.1 putative pentatricopeptide repeat-containing protein At2g02150 [Cucurbita pepo subsp. pepo]

3.7e-22

90.32

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVL+DWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

TrEMBL top hits

e value

%identity

Alignment

A0A2I4EQH5 putative pentatricopeptide repeat-containing protein At2g02150

3.3e-21

91.8

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKI
        RCTA MIAAYEKKNLLDKALNLLLQLEKDGFE GVAT+ VLVDWLGKLQLV+EAEQLLGKI
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKI

A0A2N9GMQ8 PPR_long domain-containing protein

2.6e-21

93.33

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGK
        RCTA MIAAYEKKNLLDKALNLLLQLEKDGFE GVAT+ VLVDWLGKLQLVDEAEQLLGK
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGK

A0A6J1CRK9 pentatricopeptide repeat-containing protein At5g39710

2.6e-21

87.1

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE G +T+AVL+DWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

A0A6J1HDE2 putative pentatricopeptide repeat-containing protein At2g02150

1.4e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

A0A6J1K9D9 putative pentatricopeptide repeat-containing protein At2g02150

1.4e-22

91.94

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG
        RCTA M+AAYEKKNLLDKALNLLLQLEKDGFE GVAT+AVLVDWLGKLQLVDEAEQ+LGKIG
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLLGKIG

SwissProt top hits

e value

%identity

Alignment

Q940Z1 Pentatricopeptide repeat-containing protein At1g19525

3.5e-15

43.24

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Query:  IENDKRKGDKDPLDIEAKAHIVEASRNDNVTIKRFCRAIMNAIVEYGDEFRCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQL
        I +  +     PL  EA +  VEA        K          + +  + +C A ++ AY+ +N LDKAL LLLQLEKDG EIGV T+ VLVDW+  L L
Subjt:  IENDKRKGDKDPLDIEAKAHIVEASRNDNVTIKRFCRAIMNAIVEYGDEFRCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQL

Query:  VDEAEQLLGKI
        ++EAEQLL KI
Subjt:  VDEAEQLLGKI

Q9LPC4 Pentatricopeptide repeat-containing protein At1g01970

4.5e-07

46.55

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLL
        +C A ++AAYEK+  L++AL  L++LEKD   +G    AVL  W  KL +V+E E LL
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLL

Arabidopsis top hits

e value

%identity

Alignment

AT1G01970.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.2e-08

46.55

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Query:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLL
        +C A ++AAYEK+  L++AL  L++LEKD   +G    AVL  W  KL +V+E E LL
Subjt:  RCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQLVDEAEQLL

AT1G19520.1 pentatricopeptide (PPR) repeat-containing protein

2.5e-16

43.24

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Query:  IENDKRKGDKDPLDIEAKAHIVEASRNDNVTIKRFCRAIMNAIVEYGDEFRCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQL
        I +  +     PL  EA +  VEA        K          + +  + +C A ++ AY+ +N LDKAL LLLQLEKDG EIGV T+ VLVDW+  L L
Subjt:  IENDKRKGDKDPLDIEAKAHIVEASRNDNVTIKRFCRAIMNAIVEYGDEFRCTARMIAAYEKKNLLDKALNLLLQLEKDGFEIGVATFAVLVDWLGKLQL

Query:  VDEAEQLLGKI
        ++EAEQLL KI
Subjt:  VDEAEQLLGKI

Sequences

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CDS sequence

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ATGCTTTTAGGACAGCGATTGATAACTCTCAATTTTGCTACAGGAGGCAATTACACTTGGGTGAAGAACCAATGGTCAGTAAGACTCCATATTGAAAATGACAAAAGAAA
GGGAGATAAAGATCCACTAGATATTGAAGCCAAAGCTCACATTGTTGAAGCTTCAAGGAATGACAATGTAACTATTAAGCGTTTTTGTAGAGCTATAATGAATGCTATAG
TAGAGTATGGAGATGAATTCCGGTGCACTGCACGTATGATTGCAGCCTATGAAAAGAAGAATCTGTTGGACAAGGCTTTGAATCTTTTACTACAACTTGAAAAGGATGGG
TTTGAGATTGGGGTTGCTACTTTTGCTGTTCTTGTAGACTGGTTAGGTAAGTTGCAGCTGGTTGATGAAGCTGAGCAGCTATTAGGCAAGATTGGCACATAG

mRNA sequence

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Protein sequence

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MLLGQRLITLNFATGGNYTWVKNQWSVRLHIENDKRKGDKDPLDIEAKAHIVEASRNDNVTIKRFCRAIMNAIVEYGDEFRCTARMIAAYEKKNLLDKALNLLLQLEKDG
FEIGVATFAVLVDWLGKLQLVDEAEQLLGKIGT

Lag0011430 (gene) of Sponge gourd (AG-4) v1 genome