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Lag0011432 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011432
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr1:24590001..24591997
RNA-Seq ExpressionLag0011432
SyntenyLag0011432
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0043531 - ADP binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8698356.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Hibiscus syriacus]1.6e-1176.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
KAE8699235.1 hypothetical protein F3Y22_tig00110584pilonHSYRG00372 [Hibiscus syriacus]1.2e-1176.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
KAE8706056.1 Detected protein of unknown function [Hibiscus syriacus]1.6e-1176.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
KAG7559138.1 Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabidopsis arenosa]7.1e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE + NK W++AMDEEIKAIKKNDTWEL SLP GHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
KOM27543.1 hypothetical protein LR48_Vigan437s000300 [Vigna angularis]7.1e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP+NFQE +  K+W+ AMDEEI+AIKKNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
TrEMBL top hitse value%identityAlignment
A0A0L9TAH8 Reverse transcriptase Ty1/copia-type domain-containing protein3.4e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP+NFQE +  K+W+ AMDEEI+AIKKNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
A0A6A2Y2C5 Uncharacterized protein7.6e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
A0A6A2YHX5 Uncharacterized protein7.6e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
A0A6A2YXM4 Integrase catalytic domain-containing protein7.6e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
A0A6A3A7W1 Uncharacterized protein5.8e-1276.6Show/hide
Query:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
        EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Subjt:  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAACTCAAGTGAAAGGATTCCACGTTTCAGAAGATTACAAGAACTCTATGAGTGAGCCCATAAACTTCCAAGAAACAGTGACAAACAAAAATTGGAAAAGCGCTAT
GGATGAAGAGATCAAGGCAATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCAAAGTGAAGTGGTGTGGCTTTTCTATTCCGGCGA
GAGCGGCAGTTGCGGGCTCCTTTTGCGATTGGTGTTGGTTCTGTCCAACAAGAGGTTGTACAGGCGGGTTGTTCTTCTCGATTTGGGTGCTCTTCACGATTTGGATCCAA
CGTTGTGGCTCTTCACATATAAAGCGACTTTTCTATTCCGGCGAGAGTGGCGGTGATGAGGGTTTCTGGGTTCAGGCATGTGGTCCGAATGGTTTGTGTGTGCAGTTGGG
TTCAGGGCTAGTTCTGGTGTGGTTGTGTTGGGGGCTGATTGCTAACTCTATTGTTTTGGTTTTGTGTTCAGTGGCGTGGTCCGGTAGGACTGTCAGACTCGGTGGAGAAA
ATACTGAGAAGGAGAAGCATGTGGTTGAGTTTAGGGATGATGAATTGGCTCTCTCTAATGAACAAATGCAAGTTTCTTTGGTGGTTAAGTTACTGACTGACAAATTGGTG
AATCTTCCTCTTGTAAGGTTCACAAAGACAAAGGCGAAGGTCCTAGGTGAGATGATGGGTGTATTTGATTGGGCATATCTCACAGGTGAAGGGAAATTATGGGGGAAGCC
ACTGCGAGTTTGGATCTTTGTGGATGTGACTCAACGCCTCCTGAGGGATGTTATGATTGACCGGGTTCAATGGCAGAGGAGAGATAGGTGCCGGTTTCCTATGAAAAACT
CCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAACTCAAGTGAAAGGATTCCACGTTTCAGAAGATTACAAGAACTCTATGAGTGAGCCCATAAACTTCCAAGAAACAGTGACAAACAAAAATTGGAAAAGCGCTAT
GGATGAAGAGATCAAGGCAATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCAAAGTGAAGTGGTGTGGCTTTTCTATTCCGGCGA
GAGCGGCAGTTGCGGGCTCCTTTTGCGATTGGTGTTGGTTCTGTCCAACAAGAGGTTGTACAGGCGGGTTGTTCTTCTCGATTTGGGTGCTCTTCACGATTTGGATCCAA
CGTTGTGGCTCTTCACATATAAAGCGACTTTTCTATTCCGGCGAGAGTGGCGGTGATGAGGGTTTCTGGGTTCAGGCATGTGGTCCGAATGGTTTGTGTGTGCAGTTGGG
TTCAGGGCTAGTTCTGGTGTGGTTGTGTTGGGGGCTGATTGCTAACTCTATTGTTTTGGTTTTGTGTTCAGTGGCGTGGTCCGGTAGGACTGTCAGACTCGGTGGAGAAA
ATACTGAGAAGGAGAAGCATGTGGTTGAGTTTAGGGATGATGAATTGGCTCTCTCTAATGAACAAATGCAAGTTTCTTTGGTGGTTAAGTTACTGACTGACAAATTGGTG
AATCTTCCTCTTGTAAGGTTCACAAAGACAAAGGCGAAGGTCCTAGGTGAGATGATGGGTGTATTTGATTGGGCATATCTCACAGGTGAAGGGAAATTATGGGGGAAGCC
ACTGCGAGTTTGGATCTTTGTGGATGTGACTCAACGCCTCCTGAGGGATGTTATGATTGACCGGGTTCAATGGCAGAGGAGAGATAGGTGCCGGTTTCCTATGAAAAACT
CCTAG
Protein sequenceShow/hide protein sequence
MRTQVKGFHVSEDYKNSMSEPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKWCGFSIPARAAVAGSFCDWCWFCPTRGCTGGLFFSIWVLFTIWIQ
RCGSSHIKRLFYSGESGGDEGFWVQACGPNGLCVQLGSGLVLVWLCWGLIANSIVLVLCSVAWSGRTVRLGGENTEKEKHVVEFRDDELALSNEQMQVSLVVKLLTDKLV
NLPLVRFTKTKAKVLGEMMGVFDWAYLTGEGKLWGKPLRVWIFVDVTQRLLRDVMIDRVQWQRRDRCRFPMKNS