; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011437 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011437
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr1:24745056..24746104
RNA-Seq ExpressionLag0011437
SyntenyLag0011437
Gene Ontology termsNA
InterPro domainsIPR024752 - Myb/SANT-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033487.1 uncharacterized protein E6C27_scaffold261G00210 [Cucumis melo var. makuwa]1.3e-4348.57Show/hide
Query:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL
        WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL
Subjt:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL

Query:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK
         IVF +DRA G    TP EM +       +DD+  ++ED + IP                                      D+ D     ++LL D   
Subjt:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK

Query:  FHSFLDYPTE
         H+FLDYPTE
Subjt:  FHSFLDYPTE

KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-4748.54Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRADNGTFK G L QVQKLMKEK+ G +IQVT NL+SRV+ILK+QY A+ EMMGP C+GFGWN+ERKCIEAEKSVFDDWV+    AR +        DD
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEK-DRANGEG---------ASTPNEMATDL-------------DDDVNT-----------------------DVE---------DCYSIPGMDMD
        + I  E  D  N  G          STP  MA D               D ++T                       ++E         D  +IPGMD+D
Subjt:  LAIVFEK-DRANGEG---------ASTPNEMATDL-------------DDDVNT-----------------------DVE---------DCYSIPGMDMD

Query:  DCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP
        DCL+VA++LL D    H+FLDYP EWKY+ CMRILGRQP
Subjt:  DCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP

TYK06362.1 retrotransposon protein [Cucumis melo var. makuwa]8.4e-4348.02Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRADNGTFKPG L                              +QY+A+ EMMGP C+GFGWN+ERKCIEAEKSVFDDWV+GHP ARGL NKPFPYF D
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEKDRANG------------------EGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGR
        L +VF +DRA G                  +  STP  MA D      +     YS    D+ D     ++LL D    H+FLDYP EWKY+ CMRILGR
Subjt:  LAIVFEKDRANG------------------EGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGR

Query:  QP
        QP
Subjt:  QP

TYK26842.1 uncharacterized protein E5676_scaffold260G00340 [Cucumis melo var. makuwa]1.3e-4348.57Show/hide
Query:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL
        WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL
Subjt:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL

Query:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK
         IVF +DRA G    TP EM +       +DD+  ++ED + IP                                      D+ D     ++LL D   
Subjt:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK

Query:  FHSFLDYPTE
         H+FLDYPTE
Subjt:  FHSFLDYPTE

XP_031741735.1 uncharacterized protein At2g29880-like [Cucumis sativus]9.0e-4565.52Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRA NGTFKPG L QVQKLMKEK+ G +IQVT NLE RV+ILK+QY+A+VEMMGP+C+ FGWN++RKCIEAEK VFDD V+GHP ARGL NKPFPYF D
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEKDRANGEGASTPNEMAT----DL-DDDVNTDVEDCYSIP
        L IVF +DRA G    TP EM +    D+ +DD++ ++ED + IP
Subjt:  LAIVFEKDRANGEGASTPNEMAT----DL-DDDVNTDVEDCYSIP

TrEMBL top hitse value%identityAlignment
A0A5A7SW62 Myb_DNA-bind_3 domain-containing protein6.3e-4448.57Show/hide
Query:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL
        WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL
Subjt:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL

Query:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK
         IVF +DRA G    TP EM +       +DD+  ++ED + IP                                      D+ D     ++LL D   
Subjt:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK

Query:  FHSFLDYPTE
         H+FLDYPTE
Subjt:  FHSFLDYPTE

A0A5A7U7F7 Retrotransposon protein4.7e-4748.54Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRADNGTFK G L QVQKLMKEK+ G +IQVT NL+SRV+ILK+QY A+ EMMGP C+GFGWN+ERKCIEAEKSVFDDWV+    AR +        DD
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEK-DRANGEG---------ASTPNEMATDL-------------DDDVNT-----------------------DVE---------DCYSIPGMDMD
        + I  E  D  N  G          STP  MA D               D ++T                       ++E         D  +IPGMD+D
Subjt:  LAIVFEK-DRANGEG---------ASTPNEMATDL-------------DDDVNT-----------------------DVE---------DCYSIPGMDMD

Query:  DCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP
        DCL+VA++LL D    H+FLDYP EWKY+ CMRILGRQP
Subjt:  DCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP

A0A5D3BC95 Retrotransposon protein7.7e-4261.38Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRA+N TFKP  L QVQKLMKEK+   +IQVT NLESRV+ LK+QY+A+ +MMGP C+ FGWN+ERKCIEAEKSVFDDWV+GHP ARGL NKPF YF D
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP
        L IVF +D+A G       EMA+       +DD++ ++ED + IP
Subjt:  LAIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP

A0A5D3C542 Retrotransposon protein4.1e-4348.02Show/hide
Query:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD
        GWRADNGTFKPG L                              +QY+A+ EMMGP C+GFGWN+ERKCIEAEKSVFDDWV+GHP ARGL NKPFPYF D
Subjt:  GWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDD

Query:  LAIVFEKDRANG------------------EGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGR
        L +VF +DRA G                  +  STP  MA D      +     YS    D+ D     ++LL D    H+FLDYP EWKY+ CMRILGR
Subjt:  LAIVFEKDRANG------------------EGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGR

Query:  QP
        QP
Subjt:  QP

A0A5D3DTL0 Myb_DNA-bind_3 domain-containing protein6.3e-4448.57Show/hide
Query:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL
        WR DNGTFKPG L QVQKLMKEK+   +IQVT NLES V+ILK+QY+ + EMMGP C+GF WN ERKCIEAEKSV +DWV+GH  AR L NKPFPYF DL
Subjt:  WRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDL

Query:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK
         IVF +DRA G    TP EM +       +DD+  ++ED + IP                                      D+ D     ++LL D   
Subjt:  AIVFEKDRANGEGASTPNEMATDL-----DDDVNTDVEDCYSIP------------------------------------GMDMDDCLLVAKTLLADNKK

Query:  FHSFLDYPTE
         H+FLDYPTE
Subjt:  FHSFLDYPTE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein1.2e-0724.63Show/hide
Query:  RILKRQYSALVEMMGP-----TCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVF----EKDRANGEGASTPNEMATDLDDDVNT
        R+L+ +Y+ L++           +GF W++ R  I A+ +V+D +++ HP AR  R K  P ++DL  +F    E+   + +  S      T    + N+
Subjt:  RILKRQYSALVEMMGP-----TCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVF----EKDRANGEGASTPNEMATDLDDDVNT

Query:  DVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFL
        D    +  P MD     L+ + +   N+   +F+
Subjt:  DVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFL

AT2G24960.2 unknown protein1.2e-0724.63Show/hide
Query:  RILKRQYSALVEMMGP-----TCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVF----EKDRANGEGASTPNEMATDLDDDVNT
        R+L+ +Y+ L++           +GF W++ R  I A+ +V+D +++ HP AR  R K  P ++DL  +F    E+   + +  S      T    + N+
Subjt:  RILKRQYSALVEMMGP-----TCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVF----EKDRANGEGASTPNEMATDLDDDVNT

Query:  DVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFL
        D    +  P MD     L+ + +   N+   +F+
Subjt:  DVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFL

AT4G02210.1 unknown protein5.9e-1029.29Show/hide
Query:  GTFKPGNLQQVQKLMKEKL-SGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIV
        G F+     ++  L   K  S  D+ V   L++R + L+RQ++A+  ++    +GF W++ER+ + A+ +V+ D+++ H  AR    +P PY+ DL ++
Subjt:  GTFKPGNLQQVQKLMKEKL-SGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIV

AT4G02210.2 unknown protein5.9e-1029.29Show/hide
Query:  GTFKPGNLQQVQKLMKEKL-SGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIV
        G F+     ++  L   K  S  D+ V   L++R + L+RQ++A+  ++    +GF W++ER+ + A+ +V+ D+++ H  AR    +P PY+ DL ++
Subjt:  GTFKPGNLQQVQKLMKEKL-SGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAACTAGTGGATGGCGGGCTGACAATGGGACCTTCAAACCGGGGAACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGTCAGGATGTGACATACAAGTAAC
GTCGAACTTGGAGTCTAGAGTGAGGATCCTGAAAAGGCAATACAGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAATGGGTTTGGCTGGAATGATGAGCGAAAGTGCA
TTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGAG
AAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATTCTATCCCGGGAATGGA
CATGGACGACTGTTTGCTTGTGGCCAAGACTCTGTTGGCTGATAACAAGAAATTTCACTCATTCCTTGACTACCCTACTGAATGGAAGTATAAATGTTGCATGCGTATCT
TGGGAAGGCAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAACTAGTGGATGGCGGGCTGACAATGGGACCTTCAAACCGGGGAACTTGCAACAAGTACAGAAGTTGATGAAAGAGAAATTGTCAGGATGTGACATACAAGTAAC
GTCGAACTTGGAGTCTAGAGTGAGGATCCTGAAAAGGCAATACAGTGCCCTCGTCGAAATGATGGGTCCCACTTGCAATGGGTTTGGCTGGAATGATGAGCGAAAGTGCA
TTGAGGCGGAGAAATCAGTCTTTGATGATTGGGTTAGGGGACACCCAGCTGCTCGTGGTCTGAGGAACAAGCCATTCCCCTACTTCGATGACCTAGCAATTGTTTTCGAG
AAGGATAGGGCCAATGGAGAAGGTGCTTCGACTCCGAACGAAATGGCCACTGACTTGGATGATGACGTGAACACAGATGTTGAAGATTGTTATTCTATCCCGGGAATGGA
CATGGACGACTGTTTGCTTGTGGCCAAGACTCTGTTGGCTGATAACAAGAAATTTCACTCATTCCTTGACTACCCTACTGAATGGAAGTATAAATGTTGCATGCGTATCT
TGGGAAGGCAGCCATGA
Protein sequenceShow/hide protein sequence
MSTSGWRADNGTFKPGNLQQVQKLMKEKLSGCDIQVTSNLESRVRILKRQYSALVEMMGPTCNGFGWNDERKCIEAEKSVFDDWVRGHPAARGLRNKPFPYFDDLAIVFE
KDRANGEGASTPNEMATDLDDDVNTDVEDCYSIPGMDMDDCLLVAKTLLADNKKFHSFLDYPTEWKYKCCMRILGRQP