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Lag0011445 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011445
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionribosomal RNA large subunit methyltransferase E-like
Genome locationchr1:24884791..24885886
RNA-Seq ExpressionLag0011445
SyntenyLag0011445
Gene Ontology termsGO:0031167 - rRNA methylation (biological process)
GO:0008650 - rRNA (uridine-2'-O-)-methyltransferase activity (molecular function)
InterPro domainsIPR002877 - Ribosomal RNA methyltransferase FtsJ domain
IPR029063 - S-adenosyl-L-methionine-dependent methyltransferase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602386.1 hypothetical protein SDJN03_07619, partial [Cucurbita argyrosperma subsp. sororia]1.6e-4588.39Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPKGK
        KNKLKALSPK K
Subjt:  KNKLKALSPKGK

KAG7033062.1 rlmE [Cucurbita argyrosperma subsp. argyrosperma]4.6e-4579.53Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL------------------EQKVKVPHVHC
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+                  EQKVKVPHVHC
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL------------------EQKVKVPHVHC

Query:  DSRVQTVCADVMNLPKNKLKALSPKGK
        DSRVQTVCADVMNLPKNKLKALSPK K
Subjt:  DSRVQTVCADVMNLPKNKLKALSPKGK

XP_022134056.1 uncharacterized protein LOC111006421 isoform X2 [Momordica charantia]2.7e-4561.8Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK
        MSGAG PDFFYREAQRLGYV+RSA KIQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL    +KVKVPHVHCDSRVQTV ADVMNLP+NK
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK

Query:  LKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL
        LKALSPK                                                   GKD+ DDSTSV D  YDG+L
Subjt:  LKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL

XP_022960605.1 uncharacterized protein LOC111461336 [Cucurbita moschata]1.6e-4588.39Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPKGK
        KNKLKALSPK K
Subjt:  KNKLKALSPKGK

XP_023543349.1 uncharacterized protein LOC111802921 [Cucurbita pepo subsp. pepo]1.6e-4588.39Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPKGK
        KNKLKALSPK K
Subjt:  KNKLKALSPKGK

TrEMBL top hitse value%identityAlignment
A0A1S4E250 ribosomal RNA large subunit methyltransferase E isoform X23.8e-4587.16Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK
        MSGAGAPDFFYREAQRLGYV+RSA KIQ QFKLI SGSSVLDLGCAPGAWLQVACQSLGP +NGGSVL    +KVKVPHVHCDSRVQTVCADVMNLPK+K
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK

Query:  LKALSPKGK
        LK+LSPK K
Subjt:  LKALSPKGK

A0A6J1BWX0 uncharacterized protein LOC111006421 isoform X21.3e-4561.8Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK
        MSGAG PDFFYREAQRLGYV+RSA KIQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL    +KVKVPHVHCDSRVQTV ADVMNLP+NK
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLPKNK

Query:  LKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL
        LKALSPK                                                   GKD+ DDSTSV D  YDG+L
Subjt:  LKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL

A0A6J1BWZ2 uncharacterized protein LOC111006421 isoform X15.4e-4460.77Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAG PDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL    +KVKVPHVHCDSRVQTV ADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL
        +NKLKALSPK                                                   GKD+ DDSTSV D  YDG+L
Subjt:  KNKLKALSPK---------------------------------------------------GKDNADDSTSVADHYYDGVL

A0A6J1H9J8 uncharacterized protein LOC1114613367.6e-4688.39Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+    +KVKVPHVHCDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPKGK
        KNKLKALSPK K
Subjt:  KNKLKALSPKGK

A0A6J1JHT1 uncharacterized protein LOC1114871163.8e-4587.5Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAGAPDFFYREAQRLGYV+RSA K   IQKQFKLI SGSSVLDLGCAPGAWLQVACQSLGPLKNGGSV+    +KVKVPHV+CDSRVQTVCADVMNLP
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPKGK
        KNKLKALSPK K
Subjt:  KNKLKALSPKGK

SwissProt top hitse value%identityAlignment
A0RV28 Ribosomal RNA large subunit methyltransferase E3.0e-0745.31Show/hide
Query:  DFFYREAQRLGYVSRSASKIQ---KQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL
        D + + A+  GY SR+A K++   K +++I +G +VLDLGCAPG+W+QVA  + G   N G+VL
Subjt:  DFFYREAQRLGYVSRSASKIQ---KQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVL

A8ZT18 Ribosomal RNA large subunit methyltransferase E2.3e-0731.31Show/hide
Query:  GAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKL
        G   PD + R+A+   Y +RS  K   IQK+  ++  G++VLDLGC PG+W+  A +++G    GG V    +K    H  ++  ++  D+  + +  L
Subjt:  GAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKL

Q0W1F9 Ribosomal RNA large subunit methyltransferase E3.9e-0737.21Show/hide
Query:  DFFYREAQRLGYVSRSASKIQ---KQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADV
        D +Y +A+++GY SR++ K+Q   K+  +I  G +V+DLG APG WLQVA +    L  GG V+   V +  +     V+T+  D+
Subjt:  DFFYREAQRLGYVSRSASKIQ---KQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADV

Q2W0P2 Ribosomal RNA large subunit methyltransferase E3.9e-0745.45Show/hide
Query:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPL--KNGGSVL
        D +  EA+RLGY SR+A K   + ++F ++  G  V+DLG APG W QVA + +G L  K GG V+
Subjt:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPL--KNGGSVL

Q8TR92 Ribosomal RNA large subunit methyltransferase E3.9e-0736.19Show/hide
Query:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADVM--NLPKNKLKALS
        D++Y +A+  GY SR++ K   I ++  +I  G SV+DLG APG WLQVA Q      +GG VL   V +  +     V+T+  D+   +  K  ++A+ 
Subjt:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADVM--NLPKNKLKALS

Query:  PKGKD
         KG D
Subjt:  PKGKD

Arabidopsis top hitse value%identityAlignment
AT4G25730.1 FtsJ-like methyltransferase family protein1.9e-0438.89Show/hide
Query:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSL
        D +YR A+  G+ SR++ K   +  ++ L++S  +VLDL  APG W+QVA + +
Subjt:  DFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSL

AT5G13830.1 FtsJ-like methyltransferase family protein1.3e-3771.82Show/hide
Query:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP
        MSGAG PDFFYREAQRLGYV+RSA K   IQKQ+KLI  GSSVLDLGCAPGAWLQVACQSLGPL++GG V+    +KVKVP   CDSRVQT+ ADV+N P
Subjt:  MSGAGAPDFFYREAQRLGYVSRSASK---IQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLE---QKVKVPHVHCDSRVQTVCADVMNLP

Query:  KNKLKALSPK
        + K++ LSP+
Subjt:  KNKLKALSPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGAGCAGGGGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCTCAAGATCCGCCTCCAAGATTCAAAAGCAATTCAAGTTGATTAATTCAGG
CTCGTCCGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCTGAAGAATGGAGGCTCTGTTTTGGAACAAAAGGTAAAGG
TTCCTCATGTGCATTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGAAGGCACTATCTCCTAAGGGCAAGGACAATGCGGAT
GATTCAACTTCAGTTGCAGATCATTATTATGATGGTGTGCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGGAGCAGGGGCACCCGATTTCTTCTACAGAGAGGCTCAACGCCTTGGCTATGTCTCAAGATCCGCCTCCAAGATTCAAAAGCAATTCAAGTTGATTAATTCAGG
CTCGTCCGTTTTGGACCTTGGTTGTGCTCCCGGTGCCTGGCTTCAGGTAGCTTGCCAGAGTCTGGGGCCTCTGAAGAATGGAGGCTCTGTTTTGGAACAAAAGGTAAAGG
TTCCTCATGTGCATTGTGACTCAAGGGTTCAAACTGTTTGTGCTGATGTAATGAACCTTCCCAAAAACAAATTGAAGGCACTATCTCCTAAGGGCAAGGACAATGCGGAT
GATTCAACTTCAGTTGCAGATCATTATTATGATGGTGTGCTGTAA
Protein sequenceShow/hide protein sequence
MSGAGAPDFFYREAQRLGYVSRSASKIQKQFKLINSGSSVLDLGCAPGAWLQVACQSLGPLKNGGSVLEQKVKVPHVHCDSRVQTVCADVMNLPKNKLKALSPKGKDNAD
DSTSVADHYYDGVL