; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0011450 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0011450
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr1:25088812..25092622
RNA-Seq ExpressionLag0011450
SyntenyLag0011450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFP87325.1 erad-associated E3 ubiquitin-protein ligase hrd1a [Phtheirospermum japonicum]3.0e-0729.61Show/hide
Query:  EEAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYICK-----KYGMALANSIGA
        E A+L++ M + R+  E+K   V ++ N + I    +       + + K  + + F++ ILKI    G V+++  G+NL+I +         AL      
Subjt:  EEAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYICK-----KYGMALANSIGA

Query:  FVKMDEDEVEGSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDEGGEEEN
        F K++E+E+         I++  E+LP FCY CGR GH   DCED    ++N
Subjt:  FVKMDEDEVEGSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDEGGEEEN

KAG6591872.1 hypothetical protein SDJN03_14218, partial [Cucurbita argyrosperma subsp. sororia]1.1e-0448.44Show/hide
Query:  MEEAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKI
        MEE +  K + K++LT EE+G +V+ EDNDID +D+ + N +ACKILT+K I+ K  + L+ KI
Subjt:  MEEAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKI

XP_022938329.1 uncharacterized protein LOC111444463 [Cucurbita moschata]1.2e-0641.94Show/hide
Query:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY
        MPPR RG GL       GRGRGRG     +  +EQ VPP             PA P  A   T  L D LQ ++ N+T NQ A A+       ST  +KY
Subjt:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY

Query:  LKDFKRYDPPAFNGKTVDPTAARL
        L+DFKR DP  F G + DPT A++
Subjt:  LKDFKRYDPPAFNGKTVDPTAARL

XP_023520277.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111783585 [Cucurbita pepo subsp. pepo]1.1e-0437.74Show/hide
Query:  GRGLGRGR-GRGQVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLEDLQALLGNITTNQTAQANQNQDRAGSTEGSKYLKDFKRYDPPAFNGKTVD
        GRG GRGR GR +  +EQ +PP            + AP A        +  LQ ++ N+T NQ A A+       ST  ++YL+DFKR DP  F G + D
Subjt:  GRGLGRGR-GRGQVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLEDLQALLGNITTNQTAQANQNQDRAGSTEGSKYLKDFKRYDPPAFNGKTVD

Query:  PTAARL
        PT A++
Subjt:  PTAARL

XP_023546459.1 uncharacterized protein LOC111805576 [Cucurbita pepo subsp. pepo]1.1e-0438.71Show/hide
Query:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY
        MPPR RG GL       GRGRGRG     +  +EQ VPP             PA P  A   T  L + LQ ++ N+T N  A++        ST  + Y
Subjt:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY

Query:  LKDFKRYDPPAFNGKTVDPTAARL
        L+DFKR DP  F G + DPT A++
Subjt:  LKDFKRYDPPAFNGKTVDPTAARL

TrEMBL top hitse value%identityAlignment
A0A2N9GHD2 CCHC-type domain-containing protein2.6e-0423.08Show/hide
Query:  KLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYIC--------KKYGMALANSIGA
        +L +   +MRL+  EK  L ++    I  + K+   +   ++LT++S + + F+  I  +W     + ++    NL++         ++ G  + N IG 
Subjt:  KLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYIC--------KKYGMALANSIGA

Query:  FVKMDEDE---------------------VEGSMAEEE-----WILITIEKLPYFCYQCGRLGHTMNDC
         +++D  E                     + G + E++     W+    E LP FCY+CGR+GH+ N+C
Subjt:  FVKMDEDE---------------------VEGSMAEEE-----WILITIEKLPYFCYQCGRLGHTMNDC

A0A5C7I3H2 CCHC-type domain-containing protein2.6e-0423.01Show/hide
Query:  EAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAAC---KILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYICKKYGMALANSIGAFVK
        E+++ K    + L  E+    V + +   ++    +AN   C   K+L+ K ++ + F+ LI ++W   G V+++  G N++I  K+   LA  +G  ++
Subjt:  EAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAAC---KILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYICKKYGMALANSIGAFVK

Query:  MDEDE-------------VEGSMAEEEWILITI-------------EKLPYFCYQCGRLGHTMNDCEDEGGEEENDDEQQYVCDAGLLLPAVNVTSHPSP
        +  +              +E S   + W+ + +             E+LP FCY CG +GH + DC D   +            + +  P V+      P
Subjt:  MDEDE-------------VEGSMAEEEWILITI-------------EKLPYFCYQCGRLGHTMNDCEDEGGEEENDDEQQYVCDAGLLLPAVNVTSHPSP

Query:  PPSRSS---DVGIRD--HRRGTISAA
          S  S   DV I D   R+G + A+
Subjt:  PPSRSS---DVGIRD--HRRGTISAA

A0A5C7ISQ0 CCHC-type domain-containing protein3.4e-0425.5Show/hide
Query:  LTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYIC---------KKYGMALANSIGAFVKMDEDEV
        + VEE   ++E  +        D+  +   K+L+ K ++   F+ LI ++W   GKV+++    N ++          ++    LA  IG  V++  D  
Subjt:  LTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYIC---------KKYGMALANSIGAFVKMDEDEV

Query:  E------------GSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDE
        E            G   +   + +  E+LP FC+ CGR+GH +N+C DE
Subjt:  E------------GSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDE

A0A5D3C0K2 Reverse transcriptase3.4e-0451.22Show/hide
Query:  GSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDEGGEEE
        G MA+E+WI ++ EKLP FCY+CGR+GH + +C++ G + E
Subjt:  GSMAEEEWILITIEKLPYFCYQCGRLGHTMNDCEDEGGEEE

A0A6J1FDR9 uncharacterized protein LOC1114444635.6e-0741.94Show/hide
Query:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY
        MPPR RG GL       GRGRGRG     +  +EQ VPP             PA P  A   T  L D LQ ++ N+T NQ A A+       ST  +KY
Subjt:  MPPRMRGRGL-------GRGRGRG-----QVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED-LQALLGNITTNQTAQANQNQDRAGSTEGSKY

Query:  LKDFKRYDPPAFNGKTVDPTAARL
        L+DFKR DP  F G + DPT A++
Subjt:  LKDFKRYDPPAFNGKTVDPTAARL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGCGAAACTACTCAAATCTATGAACAAAATGCGACTAACAGTGGAGGAGAAAGGAGGCTTAGTAGAAGTTGAAGACAATGATATAGACATCACCGATAAGGA
TATAGCAAACACAGCAGCTTGCAAAATCCTAACCTCCAAAAGCATCAGTGCAAAGAACTTTCAACGGCTAATACTGAAGATATGGGGCATCGAAGGGAAAGTCCAGATGA
AAAAATCGGGCAAAAACTTATATATATGCAAGAAATATGGAATGGCGTTGGCGAACTCAATTGGGGCATTTGTAAAGATGGACGAAGATGAAGTTGAAGGCTCAATGGCT
GAAGAAGAGTGGATACTGATAACGATCGAGAAACTGCCATACTTTTGCTACCAATGCGGGAGATTGGGACACACAATGAATGATTGTGAGGATGAAGGAGGGGAAGAGGA
AAACGATGATGAGCAACAGTATGTCTGTGACGCCGGACTTCTTCTTCCAGCCGTGAACGTCACCAGCCACCCATCACCTCCTCCCTCTCGAAGCTCCGACGTCGGCATCA
GGGACCACCGGCGAGGCACGATTTCGGCAGCGTCTTTCCAGCGCAGTAGGGGTGACGACAGTTTTGTATTCTTCGGCACATCGTTCGGCGCGTCCAGCAGTGCTTGGCGG
TGTCTCAGCGACTTCGGGCAAGCGTTTGCTTCGTTTTCGACGGTTCTCGCAGTGGGTCTTCGAGTTTCAGTGTCGTGGAGCACCATCGTTGTTTTGATCGTATGGTCTGA
TGGTTCTGCATGTCTGAATGGTTGTGGATGCGAGGTCCATCTCGCTCTGATTTTGGTAATCTGTAGTGCTTATGGCTTGTGGTTGGATAATGGAGATCATAGAAGTGTTT
ATTTTTCCTTTCAGAGCTCAGTTTCAGGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCAGGCACGTTGTTCGTGCGCCATTTGGCACCAGG
CATGCTTACATGCGTCAGAGGTACTTGAGAGCGTTGGCGATCGGCGAGAGTCGTGGCTTGGTTGGCTATGGGACTGCAACTGCAAATTTTACTCGCTTACGTCATAAGCA
TCAGAATTCCCATAGCCAAGTACAAGTAAGCACGCCTTGTCATCGCCAGAGTATGCCTCCACGTATGCGAGGTCGAGGATTGGGTCGTGGACGTGGTAGGGGTCAGGTAC
CTCTAGAGCAAGTGGTTCCTCCAGTGGGTCACCAAGCTGACAATGGACCTGAGATTCAGATACCTGCACCCCCAGCGCAGGCACAGACAGTCACCTTGACACTAGAAGAC
CTTCAAGCTCTCCTGGGCAATATTACAACCAATCAGACAGCTCAGGCGAACCAGAACCAGGATCGAGCAGGGTCGACTGAGGGCTCTAAGTATCTGAAGGACTTTAAAAG
ATATGACCCACCAGCGTTCAATGGGAAGACGGTGGACCCCACTGCTGCGAGGCTTGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGCGAAACTACTCAAATCTATGAACAAAATGCGACTAACAGTGGAGGAGAAAGGAGGCTTAGTAGAAGTTGAAGACAATGATATAGACATCACCGATAAGGA
TATAGCAAACACAGCAGCTTGCAAAATCCTAACCTCCAAAAGCATCAGTGCAAAGAACTTTCAACGGCTAATACTGAAGATATGGGGCATCGAAGGGAAAGTCCAGATGA
AAAAATCGGGCAAAAACTTATATATATGCAAGAAATATGGAATGGCGTTGGCGAACTCAATTGGGGCATTTGTAAAGATGGACGAAGATGAAGTTGAAGGCTCAATGGCT
GAAGAAGAGTGGATACTGATAACGATCGAGAAACTGCCATACTTTTGCTACCAATGCGGGAGATTGGGACACACAATGAATGATTGTGAGGATGAAGGAGGGGAAGAGGA
AAACGATGATGAGCAACAGTATGTCTGTGACGCCGGACTTCTTCTTCCAGCCGTGAACGTCACCAGCCACCCATCACCTCCTCCCTCTCGAAGCTCCGACGTCGGCATCA
GGGACCACCGGCGAGGCACGATTTCGGCAGCGTCTTTCCAGCGCAGTAGGGGTGACGACAGTTTTGTATTCTTCGGCACATCGTTCGGCGCGTCCAGCAGTGCTTGGCGG
TGTCTCAGCGACTTCGGGCAAGCGTTTGCTTCGTTTTCGACGGTTCTCGCAGTGGGTCTTCGAGTTTCAGTGTCGTGGAGCACCATCGTTGTTTTGATCGTATGGTCTGA
TGGTTCTGCATGTCTGAATGGTTGTGGATGCGAGGTCCATCTCGCTCTGATTTTGGTAATCTGTAGTGCTTATGGCTTGTGGTTGGATAATGGAGATCATAGAAGTGTTT
ATTTTTCCTTTCAGAGCTCAGTTTCAGGCACGCTAGCGTGCGCTCTCTCAGTTCAGGACGGTGTTGAGCTTATGATCAGGCACGTTGTTCGTGCGCCATTTGGCACCAGG
CATGCTTACATGCGTCAGAGGTACTTGAGAGCGTTGGCGATCGGCGAGAGTCGTGGCTTGGTTGGCTATGGGACTGCAACTGCAAATTTTACTCGCTTACGTCATAAGCA
TCAGAATTCCCATAGCCAAGTACAAGTAAGCACGCCTTGTCATCGCCAGAGTATGCCTCCACGTATGCGAGGTCGAGGATTGGGTCGTGGACGTGGTAGGGGTCAGGTAC
CTCTAGAGCAAGTGGTTCCTCCAGTGGGTCACCAAGCTGACAATGGACCTGAGATTCAGATACCTGCACCCCCAGCGCAGGCACAGACAGTCACCTTGACACTAGAAGAC
CTTCAAGCTCTCCTGGGCAATATTACAACCAATCAGACAGCTCAGGCGAACCAGAACCAGGATCGAGCAGGGTCGACTGAGGGCTCTAAGTATCTGAAGGACTTTAAAAG
ATATGACCCACCAGCGTTCAATGGGAAGACGGTGGACCCCACTGCTGCGAGGCTTGGATAG
Protein sequenceShow/hide protein sequence
MEEAKLLKSMNKMRLTVEEKGGLVEVEDNDIDITDKDIANTAACKILTSKSISAKNFQRLILKIWGIEGKVQMKKSGKNLYICKKYGMALANSIGAFVKMDEDEVEGSMA
EEEWILITIEKLPYFCYQCGRLGHTMNDCEDEGGEEENDDEQQYVCDAGLLLPAVNVTSHPSPPPSRSSDVGIRDHRRGTISAASFQRSRGDDSFVFFGTSFGASSSAWR
CLSDFGQAFASFSTVLAVGLRVSVSWSTIVVLIVWSDGSACLNGCGCEVHLALILVICSAYGLWLDNGDHRSVYFSFQSSVSGTLACALSVQDGVELMIRHVVRAPFGTR
HAYMRQRYLRALAIGESRGLVGYGTATANFTRLRHKHQNSHSQVQVSTPCHRQSMPPRMRGRGLGRGRGRGQVPLEQVVPPVGHQADNGPEIQIPAPPAQAQTVTLTLED
LQALLGNITTNQTAQANQNQDRAGSTEGSKYLKDFKRYDPPAFNGKTVDPTAARLG